DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and skr-16

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_501128.2 Gene:skr-16 WormBaseID:WBGene00004822 Length:181 Species:Caenorhabditis elegans

Alignment Length:155 Identity:54/156 (35%)
Similarity:78/156 (50%) Gaps:11/156 (7%)


  Fly     3 IIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDDP 67
            |..|.|:|.|.|.||....:.|:.:..|.:.|  |:.::.:.:..|....|.:||.|...|:||.
 Worm    31 IFILISSDGEKFQTDGHCIRHSKVLMQASKSL--ETPDTPIQVEKVQGDTLNRVLEWCNNHRDDG 93

  Fly    68 VVTEEVENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGKSPQ 131
            ....:.....:    :..||..:|| :|...|.:||.|:|.|.:|.|:|..|||||||.|||:|.
 Worm    94 KYVSQCGPSLR----LPQWDFRWLKDLDNQELVDLINASNDLQMQQLMDYACKTVANMAKGKNPA 154

  Fly   132 AIRDTFAIQNDFLPQEEEQVRKENE 156
            .:|:.|.|..|    |||.....||
 Worm   155 QLRELFGILTD----EEEAELALNE 175

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 54/156 (35%)
Skp1 1..110 CDD:214704 31/108 (29%)
Skp1 84..158 CDD:279768 34/75 (45%)
skr-16NP_501128.2 Skp1 30..133 CDD:214704 31/108 (29%)
Skp1 106..>165 CDD:279768 28/59 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C231961855
eggNOG 1 0.900 E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.850

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