DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: SkpB and skr-4

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_507857.1 Gene:skr-4 WormBaseID:WBGene00004810 Length:159 Species:Caenorhabditis elegans

Alignment Length:158 Identity:76/159 (48%)
Similarity:108/159 (68%) Gaps:9/159 (6%)


  Fly     4 IRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDD-P 67
            |:|.|:|.:.|...:::...|:||.      |..|:::: |||.|.|.||:|::.|..:|.|| |
 Worm    10 IKLISSDDKTFTVSRKVISQSKTIS------GFTSEDTI-PLPKVTSAILEKIITWCEHHADDEP 67

  Fly    68 VVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGKSPQA 132
            ...|::|...|:|.:||.|||:|:|||||||||:|||||||:|:|||:||.:.||||:|||:|..
 Worm    68 KKVEKIEKGNKKTVEISEWDAEFMKVDQGTLFEIILAANYLDIRGLLEVTTQNVANMMKGKTPSQ 132

  Fly   133 IRDTFAIQNDFLPQEEEQVRKENEWCED 160
            :|..|.|.| |..:|.|.::|.|.||||
 Worm   133 VRTLFKIDN-FSEEELEAMKKGNAWCED 159

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 76/159 (48%)
Skp1 1..110 CDD:214704 49/107 (46%)
Skp1 84..158 CDD:279768 45/74 (61%)
skr-4NP_507857.1 Skp1 7..110 CDD:214704 49/107 (46%)
SKP1 10..159 CDD:227528 75/157 (48%)
Skp1 84..157 CDD:279768 45/74 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C231960884
eggNOG 1 0.900 E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 0 Normalized mean entropy S272
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoFinder 1 1.000 FOG0000898
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 1 0.960
87.760

Return to query results.
Submit another query.