DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and skr-21

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_510194.1 Gene:skr-21 WormBaseID:WBGene00004827 Length:176 Species:Caenorhabditis elegans

Alignment Length:175 Identity:41/176 (23%)
Similarity:80/176 (45%) Gaps:35/176 (20%)


  Fly     2 PIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLP---NVNSLILKKVLHWATYH 63
            |:.:::|.|.::|..:....:.|:...:.:..:    :|.|.|.|   ::.|.:|.|::.|..:|
 Worm     8 PVFKIQSCDGQVFAVEDWFIQKSKCFSVVLAQM----NNLVQPHPLKTSICSFVLVKIIEWCYHH 68

  Fly    64 KDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGK 128
            ::        |:::.....:::||..|::.:...|..|..||..|.|.|||||.|:.|:.|: |:
 Worm    69 RN--------EDQDHAQRILTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVACRAVSIML-GR 124

  Fly   129 ---------------SP----QAIRDTFAIQNDFLPQEEEQVRKE 154
                           ||    .::.|...::.|....||:.|..|
 Worm   125 TLNEVKLMLRVGGVESPSDEEDSLEDVLELEVDVDENEEDDVEIE 169

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 41/176 (23%)
Skp1 1..110 CDD:214704 23/111 (21%)
Skp1 84..158 CDD:279768 26/91 (29%)
skr-21NP_510194.1 Skp1 7..107 CDD:214704 23/111 (21%)
Skp1 82..145 CDD:279768 20/64 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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