DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: SkpB and skr-19

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_510193.4 Gene:skr-19 WormBaseID:WBGene00004825 Length:155 Species:Caenorhabditis elegans

Alignment Length:157 Identity:52/158 (33%)
Similarity:77/158 (49%) Gaps:25/158 (16%)


  Fly     2 PII--RLESADKEIFDTDQE----IAKCSETIRIAIEDL--GDESDNSVLPLPNVNSLILKKVLH 58
            |:|  :|.|.|.:.|..|:.    |.:..:..|.|..||  .|:.....|.:|   :.:::||:.
 Worm     6 PVILYKLRSTDGQRFLADRRTIGMIGRIEDLFRNAGLDLIPADQLQPIQLEIP---ATVMRKVIE 67

  Fly    59 WATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVAN 123
            |..:||.||...|    .|..|:||..|||.||.|....||::|.||....:.||..:.|:.|  
 Worm    68 WCDHHKHDPPYDE----SEPETNDIPDWDASFLMVRHNMLFDIIRAARDFTVPGLFAMCCRVV-- 126

  Fly   124 MIKGKSPQAIRDTFAIQNDFLPQEEEQ 150
               |::|:.|.|  .:.||   :||||
 Worm   127 ---GQNPREIID--GLVND---EEEEQ 145

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 52/158 (33%)
Skp1 1..110 CDD:214704 38/116 (33%)
Skp1 84..158 CDD:279768 25/68 (37%)
skr-19NP_510193.4 Skp1 8..113 CDD:214704 37/112 (33%)
SKP1 11..147 CDD:227528 50/153 (33%)
Skp1 89..145 CDD:279768 24/66 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5201
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1412723at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR11165
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.