DRSC/TRiP Functional Genomics Resources

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Protein Alignment: SkpB and CG43089

Sequence 1:NP_610729.1 Gene:SkpB FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_001246606.1 Gene:CG43089 FlyBaseID:FBgn0262535 Length:144 Species:Drosophila melanogaster

Alignment Length:139 Identity:35/140 (25%)
Similarity:67/140 (48%) Gaps:13/140 (9%)


  Fly     4 IRLESADKEIFDTDQEIAK--CSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWAT--YHK 64
            |:|::.|..|...|...|.  |.....|..|...:...:.|:|||.|::..|:.::.|.|  .:.
  Fly     9 IQLQTNDGVIHTVDMRFALQICPVRNMIMQERQKNLHTDDVIPLPRVDAKNLRFIIKWWTSVQNL 73

  Fly    65 DDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFELILAANYLNIQGLLDVTCKTVANMI-KGK 128
            |:.::|   ..|.|....:::..|     :...|.::||||:||.::..|.::...:|:.: :.:
  Fly    74 DENLLT---MGKRKLKQLLTAEHA-----NHQFLLQIILAADYLQMEKFLLISTHLMADALNECE 130

  Fly   129 SPQAIRDTF 137
            |.:.||..|
  Fly   131 SVEEIRRKF 139

Known Domains:


GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 35/140 (25%)
Skp1 1..110 CDD:214704 29/110 (26%)
Skp1 84..158 CDD:279768 14/56 (25%)
CG43089NP_001246606.1 BTB 9..111 CDD:295341 29/110 (26%)
Skp1 95..>139 CDD:279768 12/44 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR11165
RoundUp 00.000 Not matched by this tool.
11.100

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