Protein Alignment Polr3B and NRPC2

DIOPT Version :10

• Sequence 1: NP_523706.1
• Gene: Polr3B / 36289
• FlyBaseID: FBgn0004463
• Length: 1137
• Species: Drosophila melanogaster
• Sequence 2: NP_199327.4
• Gene: NRPC2 / 834550
• AraportID: AT5G45140
• Length: 1161
• Species: Arabidopsis thaliana
• Alignment Length: 1175
• Identity: 612/1175 - (52%)
• Similarity: 814/1175 - (69%)
• Gaps: 66/1175 - (5%)

  Fly     2 VELKMGDHNVEATTWDPGDSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKI 66
            ::|...||.:        |.:..|.|||...:|::|||.||:|:||||||:||||:||||.|.||
plant     8 LDLTNDDHFI--------DKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKI 64

  Fly    67 VKANELVTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGT 131
            ||||..:||..||..||::..||||:|.|.: .|..:...||.|||.|.||:|||.|:|||..|:
plant    65 VKANSRITSTVDPSIYLRFKKVRVGEPSIIN-VNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 128

  Fly   132 QRIK----RNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQL 192
            ...|    ::|::|||||:|||...|.|.||.|.||::|.||||||||||:::|.|||:||||||
plant   129 HGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQL 193

  Fly   193 SWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQ 256
            |.|:::.: |..|.:...|||||...||:|::..:..|.||..:.....|||:::.||:|:.|||
plant   194 SKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQ 258

  Fly   257 EIQSLIGIDSKSQNRFGASLI----DAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARE 317
            ||..::|.|.    ||.|||:    :..:..|.||::||:|:.:|  ||:....|.......|..
plant   259 EIVQMVGRDP----RFSASLLPSIEECVSEGVNTQKQALDYLEAK--VKKISYGTPPEKDGRALS 317

  Fly   318 LLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFED 382
            :|....||||||.:.|.:.|..||.:|:||::.|.|:|...||:||.|||||||:|.|:|::|||
plant   318 ILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFED 382

  Fly   383 LFKRMNWELKTIADKNI-----PKVKAAQFD----VVKHMRAAQITAGLESAISSGNWTIKRFKM 438
            |||.|..|    |.||:     ..::|::||    :.|..|.: |:.|||..:|:||:.||||:|
plant   383 LFKTMLSE----AIKNVDHILNKPIRASRFDFSQCLNKDSRYS-ISLGLERTLSTGNFDIKRFRM 442

  Fly   439 ERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 503
            .|.|:||||:|||:|.::|.:|:::.||||:|||||||||||||||||||.||||||:|||||||
plant   443 HRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNL 507

  Fly   504 ALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRY 568
            |||||:||:.||.|::.:.:..||.|:..:|...::.|:.|||.:||.:||.....::...:||.
plant   508 ALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRR 572

  Fly   569 MRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLL 633
            :||.|::|.:|||.|:..|.|:|:.:|.||:|||.||.:.....|||||:.||..|:|.||||:.
plant   573 LRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIR 637

  Fly   634 DGLIEYLDVNEENDSFIAWNE-----------DQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQS 687
            |||||||||||||::.||..|           :..:..|||:||||||:|||.|||:||||||||
plant   638 DGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQS 702

  Fly   688 PRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMS 752
            |||||||||||||||.|.|||.||:|:|:|.||||..|::.::||||..:|||.|||||||||||
plant   703 PRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 767

  Fly   753 YSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLD 817
            :||||||||:::||:|:|||:|||:|.|......::|.|.|.|||:.|.:   |.....|..:||
plant   768 FSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQR---TGPDAEKMQILD 829

  Fly   818 TDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSAN 880
            .||:..|||.::...|.|||::| |.::.......:...|......:|||  |...::||.:.::
plant   830 DDGLATPGEIIRPNDIYINKQVP-VDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSD 893

  Fly   881 AEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMT 945
            .:....||.::|.||.||:|||||||||||||.|:|::|||.||::.|||||:||||||||||||
plant   894 KKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMT 958

  Fly   946 VGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLE 1005
            |||.:||||.|||:..|:||||:|||     ..|||.|.|.|...||:|.|||..||||:|.|:|
plant   959 VGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVE 1023

  Fly  1006 AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLI 1070
            |||:.||:|||||||||.||||||..||:.::|||||:|:|:.||||:|||||||||:|||||||
plant  1024 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLI 1088

  Fly  1071 MERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVV 1129
            .||||||||.|||.|||.||.:.|.::      |..|::..|::.:.:|||||||||||.|||||
plant  1089 YERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVV 1153

  Fly  1130 PKMIL 1134
            |::.|
plant  1154 PRLKL 1158

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3B	NP_523706.1	RNA_pol_B_RPB2	47..1133	CDD:238353	595/1127 (53%)
		RNA_pol_Rpb2_4	546..607	CDD:428012	26/60 (43%)
		RNA_pol_Rpb2_5	628..668	CDD:428013	25/50 (50%)
NRPC2	NP_199327.4	RNA_pol_B_RPB2	45..1157	CDD:238353	595/1127 (53%)
		RNA_pol_Rpb2_4	550..611	CDD:428012	26/60 (43%)
		RNA_pol_Rpb2_5	632..683	CDD:428013	25/50 (50%)