Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001332060.1 | Gene: | NRPC2 / 834550 | AraportID: | AT5G45140 | Length: | 1161 | Species: | Arabidopsis thaliana |
Alignment Length: | 1175 | Identity: | 612/1175 - (52%) |
---|---|---|---|
Similarity: | 814/1175 - (69%) | Gaps: | 66/1175 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 VELKMGDHNVEATTWDPGDSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKI 66
Fly 67 VKANELVTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGT 131
Fly 132 QRIK----RNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQL 192
Fly 193 SWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQ 256
Fly 257 EIQSLIGIDSKSQNRFGASLI----DAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARE 317
Fly 318 LLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFED 382
Fly 383 LFKRMNWELKTIADKNI-----PKVKAAQFD----VVKHMRAAQITAGLESAISSGNWTIKRFKM 438
Fly 439 ERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 503
Fly 504 ALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRY 568
Fly 569 MRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLL 633
Fly 634 DGLIEYLDVNEENDSFIAWNE-----------DQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQS 687
Fly 688 PRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMS 752
Fly 753 YSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLD 817
Fly 818 TDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSAN 880
Fly 881 AEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMT 945
Fly 946 VGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLE 1005
Fly 1006 AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLI 1070
Fly 1071 MERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVV 1129
Fly 1130 PKMIL 1134 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 604/1143 (53%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 595/1127 (53%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 65/163 (40%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 26/60 (43%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 25/50 (50%) | ||
NRPC2 | NP_001332060.1 | RNA_pol_B_RPB2 | 45..1157 | CDD:238353 | 595/1127 (53%) |
RNA_pol_Rpb2_4 | 550..611 | CDD:398322 | 26/60 (43%) | ||
RNA_pol_Rpb2_5 | 632..683 | CDD:398323 | 25/50 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 442 | 1.000 | Domainoid score | I101 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H6981 | |
Inparanoid | 1 | 1.050 | 1153 | 1.000 | Inparanoid score | I23 |
OMA | 1 | 1.010 | - | - | QHG54037 | |
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto3497 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
15 | 14.840 |