DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13192 and gnb1l

DIOPT Version :10

Sequence 1:NP_610702.1 Gene:CG13192 / 36259 FlyBaseID:FBgn0033653 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001013526.1 Gene:gnb1l / 541381 ZFINID:ZDB-GENE-050320-77 Length:323 Species:Danio rerio


Alignment Length:338 Identity:110/338 - (32%)
Similarity:175/338 - (51%) Gaps:32/338 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAVLPPDPVFSLRSPDMGAVNSL---CFQESDRLL-AGTIKGSVFLWDLQTNRS--ALHFEVGSD 59
            ||..||||::.||... .:||:|   |..:...|| :|:.||:|.:|:|.|.|:  .|....|:.
Zfish     1 MARPPPDPLYILRGSG-ASVNALHFCCDGDGPPLLYSGSGKGAVHVWNLSTRRAERVLESHAGNS 64

  Fly    60 PI--TSLHHTPDRLVTQEKGGTITMFSIG-GSSYVKERSIPGNHLGFCRSALHTNTSKTNEQLLF 121
            .|  .:.:::...|::|.:...:.::.:. |.|.|.: |:....:|||:.:|  ..|:....||.
Zfish    65 VIWLNTFNNSRSCLISQGRDMRVCVWDLSEGRSAVTD-SLHTGSVGFCQCSL--LGSRLGSTLLA 126

  Fly   122 YP---CEESSIGVLHVTDAAAPTQI--LVPDDPQLPKLGSVTCFKPFECASQLFLLAGYESGHFL 181
            :|   .||.|     |.:.::.||:  |.||.    .||.:...|.::..|...|.||||.|..:
Zfish   127 HPTQHMEEVS-----VVEMSSWTQVCSLKPDS----NLGMLMSMKMWQADSGPVLCAGYEDGSVV 182

  Fly   182 TWDISSSVILDVMEL-AQDATSVDYDPVTNRGIVGGPTDKLISFSYQRSSMQMQLGSELCIKNPG 245
            .||:|......:::: .:...|:|.|....:||.|...:.|.|:... :...:|:...:.:.|||
Zfish   183 LWDVSHRRPFSLLKVHPEPVMSLDVDVCRQKGISGSSENILQSWRLD-NQQSLQMHDSIQMTNPG 246

  Fly   246 VNGVRIRPDQKVFASAGWDGRIRIFSWKSLRPLAVLTQHKNGGVMDLAFSSQQVAMWHAPIMAAA 310
            |:.:|||.|.|:.||||||..||:|.||.|:||||| ||....|..:|||..|.....  ::||.
Zfish   247 VSQLRIRADGKILASAGWDNNIRVFGWKKLKPLAVL-QHHTDMVNSVAFSDHQDPTQR--LLAAG 308

  Fly   311 GMDGQISLWDLYN 323
            ..|.:||:|.:|:
Zfish   309 SKDQRISVWSIYS 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13192NP_610702.1 WD40 <18..321 CDD:441893 101/317 (32%)
WD40 repeat 62..98 CDD:293791 6/36 (17%)
WD40 repeat 103..147 CDD:293791 14/48 (29%)
WD40 repeat 200..245 CDD:293791 10/44 (23%)
WD40 repeat 247..282 CDD:293791 21/34 (62%)
gnb1lNP_001013526.1 WD40 <8..319 CDD:441893 104/327 (32%)
WD40 repeat 20..58 CDD:293791 13/37 (35%)
WD40 repeat 62..129 CDD:293791 15/69 (22%)
WD40 repeat 136..199 CDD:293791 20/71 (28%)
WD40 repeat 205..235 CDD:293791 7/30 (23%)
WD40 repeat 247..283 CDD:293791 23/36 (64%)
WD40 repeat 289..317 CDD:293791 10/29 (34%)

Return to query results.
Submit another query.