DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tret1-2 and hmit-1.3

DIOPT Version :9

Sequence 1:NP_610694.1 Gene:Tret1-2 / 36249 FlyBaseID:FBgn0033644 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_497725.2 Gene:hmit-1.3 / 175458 WormBaseID:WBGene00010811 Length:604 Species:Caenorhabditis elegans


Alignment Length:550 Identity:153/550 - (27%)
Similarity:242/550 - (44%) Gaps:122/550 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VSLCSLVVGFVSAYTSPALVSMTDRTITSFEVTKDAGS-W---VGGIMPLAALAGGITGGPLIEY 95
            ::..:::.||:..|.: .:||.....:.:....|...| |   :..|.|..|..|.:..||..::
 Worm    31 LAFSAVIGGFLFGYDT-GIVSAAMLYVPNASGIKPLDSVWQEIIVSITPGVAAIGSLCSGPGSDF 94

  Fly    96 LGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQPEVRG--- 157
            |||:..|:..:|.|.:.:::.|.|...|::|.||.|.|..:|.||:.:|:|:.|.....:||   
 Worm    95 LGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLGLAIGFASMIVPIYVSEASPSHIRGKLV 159

  Fly   158 -------TLGLLPTALGN-IGILVCYVAGSFMNWSMLAFLGAALP--VPFLILMIIIPETPRWFV 212
                   |:||:   :.| ||....||....:.|.:: |..||:|  :.| :..:.:||:|||..
 Worm   160 TGFQLMITVGLV---IANIIGGAFSYVDPDQVGWRLM-FAFAAVPAIIQF-VCFLFLPESPRWLY 219

  Fly   213 NRGQEERARKAL-KWLRGKEADVEPELKELMQS-----QADADRQATQNTCLELFKRNNL-KPLS 270
            ..|:...||:.| :...|....|:.|:.|:..|     :|.|:......|.:.:.|..:: |.:.
 Worm   220 EHGRTVEAREVLTRIYNGHTEWVDYEINEISFSYEEELRAKAEHAGNGPTIIRILKTPHVRKAMI 284

  Fly   271 ISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGV----VNFFATFMGIILIDRLGR 331
            |...|..|||.||||.|::||..|.:.||  :..|.:||.:.|    :||..||:.|.|::|:||
 Worm   285 IGSLLQMFQQLSGINTVMYYTGNIIRSAG--VKDNHTTIWISVGTSAINFLGTFIPIALVERVGR 347

  Fly   332 KILLYVSDIAMIVTLSILGGFF---------------YCKAHGPDVSHLG--------------- 366
            ::||.||.|.:|:.|..:|..|               |...:.|.|.|..               
 Worm   348 RVLLLVSMIGVILFLIAMGVSFLLINNDSLRTFDQQNYTLNYNPSVKHAAKCLKYSNCDFCVTDE 412

  Fly   367 ---------------------------------------------W-----------LPLTCFVI 375
                                                         |           ||:...|.
 Worm   413 NCGFCESKVAKKGYCLPFPSDDSSDYSATGICEFSNLTNNGTDFEWEDTYCHTKFTVLPIIIMVF 477

  Fly   376 YILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFG 440
            |:|.||.|:.|:||::..|..|...|..|.||.||.||....:|:.||..|:.|...:|.|:::.
 Worm   478 YLLSFSAGYAPLPWVLNAEFYPLWARSTAVSVSTACNWIFNLIVSLTFLSLSQAATKYGTFFIYC 542

  Fly   441 AICIVGLFFVIIFVPETRGKSLEEIERKMM 470
            ...:|.|.||..|||||:|.|::|:|...|
 Worm   543 GCTMVALVFVFFFVPETKGYSIDEVEMLFM 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tret1-2NP_610694.1 Sugar_tr 31..467 CDD:278511 151/545 (28%)
MFS 33..454 CDD:119392 143/532 (27%)
hmit-1.3NP_497725.2 MFS 34..558 CDD:421695 145/531 (27%)
MFS <190..>249 CDD:421695 18/60 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158099
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I2130
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.790

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