DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and Vax2

DIOPT Version :10

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_072159.2 Gene:Vax2 / 64572 RGDID:621133 Length:292 Species:Rattus norvegicus


Alignment Length:171 Identity:51/171 - (29%)
Similarity:72/171 - (42%) Gaps:39/171 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 SPPPAAGAGATGASG--KSGEDSGTPIVWPAWVYCTRYSDRPSSGRSPRARKPKKPATSSSAAGG 452
            ||...||..|:..:|  :||.||..........:|.|...|.:.|.......||           
  Rat    42 SPREIAGTSASSPAGSRESGGDSDGQQALGETDHCRRILVRDAKGTIREIVLPK----------- 95

  Fly   453 GGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEAQIKI 517
                        |..:...||.||:|:..||.||:.||...:|:..:.|.:|:.:|.|:|.|:|:
  Rat    96 ------------GLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKV 148

  Fly   518 WFQNKRAKLKK----------SSGTKNPLA----LQLMAQG 544
            ||||:|.|.||          ||......|    |:|:.||
  Rat   149 WFQNRRTKQKKDQSRDLEKRASSSASEAFATSNVLRLLEQG 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeodomain 472..528 CDD:459649 25/55 (45%)
Engrail_1_C_sig 529..554 CDD:431338 7/20 (35%)
Vax2NP_072159.2 vax upstream domain 74..101 7/49 (14%)
homeobox 102..161 27/58 (47%)
Homeodomain 103..159 CDD:459649 25/55 (45%)
vax downstream domain 182..193 4/8 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..241
vax terminal domain 266..274
Blue background indicates that the domain is not in the aligned region.

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