DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and hoxb3

DIOPT Version :10

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:249 Identity:76/249 - (30%)
Similarity:106/249 - (42%) Gaps:50/249 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 GNRSPLKAPKKSGKPLNLAQSNAAANSSLSFSSSLANI------CSNSNDSNS-------TATSS 375
            |...|.::...|....|..|.::.:..||..|..|...      |...|.|:.       ||..|
 Frog    24 GYEGPQQSFPTSSHMDNEFQRSSCSLQSLGHSGPLVKAKNLNGSCMRPNLSSEQSQPLSPTANPS 88

  Fly   376 STTNTSGAPVDLVKSPPPAAGAGATGASGKSGEDSGTPI---VWPAWVYCTRYSDRPSSGRSPRA 437
            |.||:|.:...|.| |.||           ..:.||:|.   ::| |:..:|.:.:..|      
 Frog    89 SNTNSSSSQASLSK-PSPA-----------KSQASGSPASKQIFP-WMKESRQNSKQKS------ 134

  Fly   438 RKPKKPATSSSAAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQ 502
             .|..||..|.    ||.....|.:|       .||.|||::..||..|:.||:.||||...||.
 Frog   135 -SPPAPAAESC----GGDRSPPGSSA-------SKRARTAYTSAQLVELEKEFHFNRYLCRPRRV 187

  Fly   503 QLSGELGLNEAQIKIWFQNKRAKLKKSSGTKNPLALQLMAQGLYNHSTIPLTRE 556
            :::..|.|:|.||||||||:|.|.||....|   .:...:.|....||.||:.:
 Frog   188 EMANLLNLSERQIKIWFQNRRMKYKKDQKVK---GMSSSSGGASPTSTPPLSMQ 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeodomain 472..528 CDD:459649 29/55 (53%)
Engrail_1_C_sig 529..554 CDD:431338 5/24 (21%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 29/55 (53%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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