Protein Alignment inv and Lim3

DIOPT Version :10

• Sequence 1: NP_523699.3
• Gene: inv / 36239
• FlyBaseID: FBgn0001269
• Length: 576
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 346
• Identity: 72/346 - (20%)
• Similarity: 110/346 - (31%)
• Gaps: 114/346 - (32%)

  Fly   244 HPHQQLLLQRDQVHHHHHMQNHLNNNENLHERALKFSIDNILKADFGSRLPKIGALSGNIGGGSV 308
            ||||||.....|..|...|.||..:..::|::..:           ..:||.....|..:||
  Fly    30 HPHQQLQHPLQQQQHLSAMDNHQQHQPHIHQQQQQ-----------QQQLPPTPQASHLVGG--- 80

  Fly   309 SGSSTGSSKNSGNTNGNRSPLKAPKKSGKP---LNLAQSNAAANSSLSFSSSLANI--------- 361
                    :.....:.:.:.|...:....|   |.|...|.|..:::........:
  Fly    81 --------QQQQQQHPHHNHLAVDQDDPNPELVLALISRNRALEATIPKCGGCHELILDRFILKV 137

  Fly   362 -----------CSNS----NDS---------------NSTATSSSTTNTSGAPVDLVKSPPPAAG 396
                       ||..    ||.               ....|..|..:....|..:|
  Fly   138 LERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVV-------- 194

  Fly   397 AGATGASGKSGEDSGTPIVWPAWVY------CTRYSDRPSSG-----RSPRARKPKKPATSSSAA 450
                    :..:|:         ||      |...|...::|     ...|....|:....:.|
  Fly   195 --------RRAQDN---------VYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA- 241

  Fly   451 GGGGGGVEKGEAADGG--GVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEA 513
                    ||...||.  |...:|||||..:..||..||..:|.:.......|:|||.:.||:..
  Fly   242 --------KGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMR 298

  Fly   514 QIKIWFQNKRAK---LKKSSG 531
            .:::||||:|||   |||.:|
  Fly   299 VVQVWFQNRRAKEKRLKKDAG 319

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
inv	NP_523699.3	Homeodomain	472..528	CDD:459649	24/58 (41%)
		Engrail_1_C_sig	529..554	CDD:431338	1/3 (33%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	4/50 (8%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	11/79 (14%)
		Homeodomain	257..313	CDD:459649	23/55 (42%)