DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and hoxb3a

DIOPT Version :10

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:286 Identity:82/286 - (28%)
Similarity:117/286 - (40%) Gaps:66/286 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 GGGSVSGSS-------TGSSKNSGNTNGN--RS--PLKAPKKSGKPLNLAQSNAAANSSLSFSSS 357
            ||.|..|::       ..:.:||.:..|:  ||  .|::...|..|    |...|....|:.|..
Zfish    14 GGYSYQGANGFGYDAPAPAFQNSAHLEGDYQRSACSLQSLGTSAPP----QPQHAKTKELNGSCM 74

  Fly   358 LANICSNSNDSNSTATSSSTTNTSGAPVDLVKSPPPAAGAGATGASGKSGEDSG----------T 412
            ..::....:.....:...:|.|.  |..:..:.|..:.|.|..|:.|.|...|.          |
Zfish    75 RPSLPPEHHPPPQVSPPQNTVNV--AATNATQQPGGSGGGGVAGSGGTSKSSSKSSSMATNPTLT 137

  Fly   413 PIVWPAWVYCTRYSDRPSSGRSPRARKPKKPATSSSAAGGGGGGVEK---GEAADGGGVPEDKRP 474
            ..::| |:         ...|....:|...|:.||:.|...||  ||   |.||       .||.
Zfish   138 KQIFP-WM---------KESRQNTKQKNSSPSASSANAESSGG--EKSPPGSAA-------SKRA 183

  Fly   475 RTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKRAKLKKSSGTKN----- 534
            |||::..||..|:.||:.||||...||.:::..|.|:|.||||||||:|.|.||...:|.     
Zfish   184 RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSKGIGSSS 248

  Fly   535 ---------PLALQLMAQGLYN--HS 549
                     ||.:|..| |..|  ||
Zfish   249 GGPSPTGSPPLPMQSSA-GFMNSMHS 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeodomain 472..528 CDD:459649 29/55 (53%)
Engrail_1_C_sig 529..554 CDD:431338 9/37 (24%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 16/89 (18%)
Antp-type hexapeptide 140..145 2/14 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 15/45 (33%)
Homeodomain 181..237 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 10/38 (26%)
DUF4074 353..415 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417
Blue background indicates that the domain is not in the aligned region.

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