DRSC/TRiP Functional Genomics Resources

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Protein Alignment: cag and Pogk

Sequence 1:NP_001260876.1 Gene:cag FlyBaseID:FBgn0017414 Length:225 Species:Drosophila melanogaster
Sequence 2:NP_001100664.2 Gene:Pogk RGDID:1308951 Length:622 Species:Rattus norvegicus

Alignment Length:139 Identity:32/140 (23%)
Similarity:62/140 (44%) Gaps:31/140 (22%)


  Fly    30 LSVRDLAKRFNI--GKTQAAD------ILKHKQSIKE-------GLLSGELK-----------LN 68
            ||..|||.:|..  |..::.|      :::|.:|...       |:|...::           .:
  Rat   200 LSADDLASKFQFSRGMRRSYDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAH 264

  Fly    69 QMR---RNPLSQRGAQIDEMCFDWFSRVRTENIPISGEMVRKKAKQLAVELG--HSNFSASSGWL 128
            .||   |.|.:.|.|.:|:...::...::.:..||:.|.::.||.::|.|:.  ...|.||.||.
  Rat   265 AMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWC 329

  Fly   129 EKWRKRHNV 137
            .:..:|:::
  Rat   330 RRMMRRYDL 338

Known Domains:


GeneSequenceDomainRegion External IDIdentity
cagNP_001260876.1 CENP-B_N 7..60 CDD:282122 11/45 (24%)
CENPB 78..141 CDD:197828 16/63 (25%)
PogkNP_001100664.2 KRAB 68..123 CDD:214630
KRAB_A-box 68..105 CDD:143639
BrkDBD 214..266 CDD:286662 6/52 (12%)
CENPB 275..342 CDD:197828 16/65 (25%)
DDE_1 414..586 CDD:281213
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3105
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D1343623at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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