DRSC/TRiP Functional Genomics Resources

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Protein Alignment cag and Pogk

DIOPT Version :10

Sequence 1:NP_477207.1 Gene:cag / 36157 FlyBaseID:FBgn0017414 Length:225 Species:Drosophila melanogaster
Sequence 2:NP_001100664.2 Gene:Pogk / 304941 RGDID:1308951 Length:622 Species:Rattus norvegicus


Alignment Length:139 Identity:32/139 - (23%)
Similarity:62/139 - (44%) Gaps:31/139 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LSVRDLAKRFNI--GKTQAAD------ILKHKQSIKE-------GLLSGELK-----------LN 68
            ||..|||.:|..  |..::.|      :::|.:|...       |:|...::           .:
  Rat   200 LSADDLASKFQFSRGMRRSYDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAH 264

  Fly    69 QMR---RNPLSQRGAQIDEMCFDWFSRVRTENIPISGEMVRKKAKQLAVELG--HSNFSASSGWL 128
            .||   |.|.:.|.|.:|:...::...::.:..||:.|.::.||.::|.|:.  ...|.||.||.
  Rat   265 AMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWC 329

  Fly   129 EKWRKRHNV 137
            .:..:|:::
  Rat   330 RRMMRRYDL 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cagNP_477207.1 CENP-B_N 7..56 CDD:461229 9/33 (27%)
CENPB 78..141 CDD:197828 16/62 (26%)
PogkNP_001100664.2 KRAB 68..123 CDD:214630
BrkDBD 214..266 CDD:462838 6/51 (12%)
CENPB 275..342 CDD:197828 16/64 (25%)
DDE_1 414..586 CDD:367380
Blue background indicates that the domain is not in the aligned region.

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