Protein Alignment Lsm11 and C49H3.4

DIOPT Version :10

• Sequence 1: NP_610522.1
• Gene: Lsm11 / 36013
• FlyBaseID: FBgn0033450
• Length: 256
• Species: Drosophila melanogaster
• Sequence 2: NP_001379819.1
• Gene: C49H3.4 / 183627
• WormBaseID: WBGene00016791
• Length: 223
• Species: Caenorhabditis elegans
• Alignment Length: 226
• Identity: 52/226 - (23%)
• Similarity: 89/226 - (39%)
• Gaps: 76/226 - (33%)

  Fly    79 GDQGTSKKASTSE----AVDILPP--------ERRFEPHQMPTTSSRKKHHRNIFTYMEAAV--- 128
            |.:|.|:...|.|    .||:.|.        :.|....:...|.|:|:..|:....:||.:
 Worm    24 GVEGNSEDFKTDEFEKNLVDLHPELAEEICDFDERTVREEKEKTISKKQQARDRQIRLEAMMTDG 88

  Fly   129 -------------------GPLELLTKCISPASHNESNERR---RVRVVIRKHGSVGGSVEGELL 171
                               ||:.::...:       .|::|   |||..||    :....||...
 Worm    89 RSVIEKKGITFHDKMITIEGPMSMIANAV-------INQKRIEVRVRSAIR----IDRIFEGIPT 142

  Fly   172 AFDKQWNLLLRNVTET----WKRRKYNYGEQNICDTPVDCTGRLKELGITLPRTV---------V 223
            .||:.:||::::||||    .|.:|             :.|.| ||:.:.||..:         :
 Worm   143 TFDEHFNLMMKDVTETVLHGRKAQK-------------EFTNR-KEMQLLLPEFLRWKEGGNWPM 193

  Fly   224 KNLNRKNVEIRRELPQILIRGENVVLVSLIP 254
            |....:.:|.|.: ....|:|::||||.::|
 Worm   194 KVGTNRLIEHRFQ-RACFIKGDSVVLVRMLP 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lsm11	NP_610522.1	LSm11_M	<158..204	CDD:212485	12/49 (24%)
C49H3.4	NP_001379819.1	Sm_like	120..221	CDD:469694	33/119 (28%)