DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and Smyd4-2

DIOPT Version :10

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster


Alignment Length:765 Identity:169/765 - (22%)
Similarity:283/765 - (36%) Gaps:198/765 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NYKDEFETFKSLASMPADILQIF--QKLALDLLQDLE--QPVDRKGCAERSKNLREEGNLMFKES 80
            ||      |..|.|..|.:|.||  :::...:|..||  |||.::..|..|...|.:.:.::..|
  Fly    42 NY------FGKLKSNAARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS 100

  Fly    81 ASGSSKDS------VLKACRLYSEAVFEA--ENA---VEE---LSLAFANRGIALQEYGYYREAY 131
            .||..::|      .|.|..|   ||..|  .||   ::|   |:||:.:|...|...|....|.
  Fly   101 GSGDGEESRELLQQALMAANL---AVMRAPDRNADPVLDEGLTLALAYRSRASILIRLGEGEAAL 162

  Fly   132 DDCSNALECGYPERLRHKVIMRQAFCAWKLKKIASLEEHLDYLGQLQLKESF----EQQLEDLKQ 192
            :|...|:..|...:......::.|      |..|.:.|.......|::.|..    ...:...::
  Fly   163 NDLKLAINFGLELKSSVDYYLKMA------KAYAVMGEPARAEISLKIAEKMPGCDATHIALCRK 221

  Fly   193 KLELLKNQPREQETQGKVVDKSLGEI-----------LTDPGPRGRYMVAKEAISKGNVIFSER- 245
            :|..:|.:|:| .|..:|...:.||.           |.:...:||::||.|.:..|:|:..|. 
  Fly   222 ELSSVKPKPKE-ATSEQVPQLAHGESAELVGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEP 285

  Fly   246 -ASCFVPLEQLLICQQCAATLMSAPIPCPNCHQRVVYCSRKCR-EAHSAIHKFECAAYRKDILRL 308
             |:|..|......|..|...| ..|:.|.:| ..:.:||.:|. ||.|:.|:|||.  ..|::..
  Fly   286 VAACLEPSYFGTHCHHCFKRL-HTPVSCLHC-SGIAFCSAQCMGEACSSYHRFECE--YMDLMIG 346

  Fly   309 LGIS---HLALRLLLTYIPYIRPHLQEMTSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLD 370
            .|:|   .:||| :.|..|.:.   |.:.:|..::|.:.:    .||.....:|||...|...|.
  Fly   347 SGMSILCFIALR-IFTQAPSLE---QGLATANLLFEHLCS----HEEDRQPDDYLRRALMSGFLL 403

  Fly   371 QAIDEELNYHILCANLLQLYLKEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVGDA 435
            :.:.:.|.:.           :..|:..:     |.::|   |.::..:|.....|..|.|    
  Fly   404 RILQKSLYFG-----------RRKTEGVN-----PTAVE---LQVATALLGLLQVLQYNAH---- 445

  Fly   436 LLGVGMEPKEFVMLQPELWQKPRHLKRGQLHNLSHSDPITAINLPYL--------SLCNHACEPS 492
                       .:.|.::.::         |....|..:      ||        |..||.|.||
  Fly   446 -----------QIYQTQVTEE---------HRFDGSKTV------YLAAGLYGTGSYFNHECWPS 484

  Fly   493 IRTKFDGCSVVNYAAKDILEGEEI-FNCYTMDYRNSLKLQRSHPLKAIYKFECTCAKCTRTDPDQ 556
            ....|.|..:|..|.:.....|.: .|...:..:|:|| :|...|:..|.|.|:|..|....|..
  Fly   485 TACHFVGKKLVLTATRPHRANELVAVNYGPIFIKNNLK-ERQRSLRGRYSFSCSCMACQENWPLL 548

  Fly   557 NYLSFH-RYRCEKPNCRQEFLPDAKVQQNNLRWWLRCNAEKPITCTVCHELQHFAWYNEFLGLIG 620
            ..|... |:.|...||            :||..:.: :..|.:.|..|.:               
  Fly   549 QKLDKQVRFWCTSANC------------SNLLKFPK-DLAKDVRCPRCRK--------------- 585

  Fly   621 SSADSSKRQALFKAFDDLDKWLVDHHSLKRIMAEELVTACFYEIDGGTSLDEFEYEDLARIIRKQ 685
               :.|.::::                .|.|..|||                  |.:.||.:..|
  Fly   586 ---NISLKESV----------------AKMIKIEEL------------------YREAARAMEAQ 613

  Fly   686 LEGIAAQCGDNSTE---YIARMTYLWDIIAQK---KCRTDRKELLEMKGK 729
            ....|.:....|.:   .:|.:.:...|:||:   ||.:|.....:.:||
  Fly   614 KTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKCLSDTGTTFKKEGK 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 SET 217..>252 CDD:394802 12/47 (26%)
zf-MYND 258..298 CDD:460312 14/40 (35%)
SET <359..549 CDD:394802 40/198 (20%)
Smyd4-2NP_648574.1 BepA 87..205 CDD:443813 29/126 (23%)
SET_SMYD4 249..541 CDD:380934 81/353 (23%)
zf-MYND 299..338 CDD:460312 14/40 (35%)

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