DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-1 and smyd1a

DIOPT Version :10

Sequence 1:NP_610500.2 Gene:Smyd4-1 / 35985 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:392 Identity:80/392 - (20%)
Similarity:127/392 - (32%) Gaps:166/392 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 TDP------GPRGRYMVAKEAISKGNVIFSERASCFVPLE--QLLICQQCAATLMSAPIPCPNC- 275
            |||      |.:||.:.....:|.|.|:|:|.:...|.|:  .|.:|..|....:: |..|..| 
Zfish     6 TDPVEVFGAGLKGRGLRGTRDLSAGEVVFAEASFAAVVLDSLSLQVCHSCFRRQVN-PHRCAQCK 69

  Fly   276 --HQRVVYCSRKCREAHSAIHKFECAAYR------KDILRLLGISHLALRL----------LLTY 322
              |    ||.|.|:.|....|:.||:|.|      .:.:||  ::.:..|:          .||.
Zfish    70 FAH----YCDRTCQRAAWDEHRKECSAIRNIGKAPNENVRL--VARILWRIQKHTGLVSDSQLTT 128

  Fly   323 IPYIRPHLQEMTSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHILCANLL 387
            :..:..||..||                      ||.|:.|::                      
Zfish   129 LDMLEDHLSRMT----------------------PEDLKELKV---------------------- 149

  Fly   388 QLYLKEHTDFYDQFHSLPASI-EDWQLIISALILRFAGQLLANGHV-----GDALLGVGMEPKEF 446
                 :...||..:.....:: ||:   :|.|.    |.:..||..     |...:|:|:     
Zfish   150 -----DVKTFYTYWPKKSKAVGEDY---VSHLF----GVISCNGFTLSDQRGLQSVGIGL----- 197

  Fly   447 VMLQPELWQKPRHLKRGQLHNLSHSDPITAINLPYLSLCNHACEPSIRTKFDGCSVV-NY----- 505
                                            .|.|.|.||.|.|:       |:|: |:     
Zfish   198 --------------------------------FPNLCLVNHDCWPN-------CTVILNHGDQSA 223

  Fly   506 --------------AAKDILEGEEIFNCYTMDYRN--SLKLQRSHPLKAIYKFECTCAKCTRTDP 554
                          |.:.|..|:|:    |:.|.:  |:...|...|:..|.|:|.|..|.....
Zfish   224 LDASFHSSRRIELRALEPISAGQEL----TVSYVDFLSVSTDRQRLLQQQYYFDCKCEHCVNGTK 284

  Fly   555 DQ 556
            |:
Zfish   285 DE 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 SET 217..>252 CDD:394802 12/37 (32%)
zf-MYND 258..298 CDD:460312 12/42 (29%)
SET <359..549 CDD:394802 37/217 (17%)
smyd1aNP_991103.2 SET 9..279 CDD:394802 75/380 (20%)
zf-MYND 52..90 CDD:460312 12/42 (29%)
FxSxx_TPR <321..435 CDD:468560
Blue background indicates that the domain is not in the aligned region.

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