DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Smyd4-1 and Zmynd15

Sequence 1:NP_610500.2 Gene:Smyd4-1 FlyBaseID:FBgn0033427 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001099270.1 Gene:Zmynd15 RGDID:1309845 Length:738 Species:Rattus norvegicus

Alignment Length:105 Identity:25/106 (24%)
Similarity:35/106 (33%) Gaps:32/106 (30%)


  Fly   271 PCPNCHQRVVYCSRKCREA------HSAIHKFECAAYRKDILRLLGISHLALRLLLTYIPYIRPH 329
            |||.| ..|:||...|.:|      ....|:|.|.       ||......|..  |..:|:  .:
  Rat   323 PCPQC-SAVLYCGEACLQADWRRCPDDVSHRFWCP-------RLAAFMERAGE--LASLPF--TY 375

  Fly   330 LQEMTS--------------AKGMWEEIMNLSRKPEESEN 355
            ..|:||              .:|.|.::..|...|....|
  Rat   376 TAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGAPRN 415

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Smyd4-1NP_610500.2 zf-MYND 258..298 CDD:280009 11/33 (33%)
SET <447..526 CDD:214614
Zmynd15NP_001099270.1 zf-MYND 309..355 CDD:280009 11/33 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C56466212
eggNOG 1 0.900 E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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