DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG8800 and lrrcc1

Sequence 1:NP_610483.1 Gene:CG8800 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster
Sequence 2:XP_690381.2 Gene:lrrcc1 ZFINID:ZDB-GENE-041111-207 Length:997 Species:Danio rerio

Alignment Length:172 Identity:45/173 (26%)
Similarity:76/173 (44%) Gaps:35/173 (20%)


  Fly    40 MDSTLGTLVQ------CERISMSTNMIEKIFGLSGMKCLKVLSLSRNYIKQISGLEAVAETLEEL 98
            :|..:.:|::      ...:::..|.:.||.||:....::.|.||.|:|.:|.||.::: :|..|
Zfish     9 IDKDISSLLEVSLNPSISSLNLHCNRLTKIEGLTTAWHIRHLDLSSNHICRIEGLASLS-SLRTL 72

  Fly    99 WLSYNLIEKIKGLTGLKCLKVLYISNNLIKDWS-----------------EFNRLAEIESLEDLV 146
            .||.|||.|::||.||..|..|.::.|.|.|.:                 ..|||..:..|...:
Zfish    73 NLSCNLITKVEGLDGLTNLTRLNLAYNQINDLTGLLYLHGANYKLKYLQLHSNRLDSMNHLLQCM 137

  Fly   147 VVGNPL------SEGLDEPT-----WRAECIKRLPTIRKLDG 177
            |....|      .:|.:.|.     :|...::.|..:..|||
Zfish   138 VGLQNLKYITLSKDGAENPVCKMIGYREMVLQCLHQVTTLDG 179

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG8800NP_610483.1 LRR_9 14..184 CDD:317038 45/173 (26%)
leucine-rich repeat 50..71 CDD:275380 5/21 (24%)
leucine-rich repeat 95..116 CDD:275380 12/21 (57%)
leucine-rich repeat 117..141 CDD:275380 8/41 (20%)
lrrcc1XP_690381.2 LRR_4 23..65 CDD:289563 13/42 (31%)
leucine-rich repeat 25..46 CDD:275378 5/21 (24%)
LRR_8 46..101 CDD:290566 23/56 (41%)
LRR_4 46..87 CDD:289563 18/42 (43%)
leucine-rich repeat 47..68 CDD:275378 8/22 (36%)
LRR_4 68..107 CDD:289563 17/39 (44%)
leucine-rich repeat 69..90 CDD:275378 12/21 (57%)
LRR_8 89..149 CDD:290566 11/60 (18%)
LRR_4 89..133 CDD:289563 8/44 (18%)
leucine-rich repeat 91..116 CDD:275378 5/25 (20%)
leucine-rich repeat 117..129 CDD:275378 3/12 (25%)
Rootletin 754..>869 CDD:291694
DUF342 <817..895 CDD:302792
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR15454
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

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