DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG8800 and Lrrcc1

Sequence 1:NP_610483.1 Gene:CG8800 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_001094115.2 Gene:Lrrcc1 RGDID:628722 Length:1025 Species:Rattus norvegicus

Alignment Length:179 Identity:59/180 (33%)
Similarity:86/180 (48%) Gaps:42/180 (23%)


  Fly    40 MDSTLGTL-VQCERIS---------------MSTNMIEKIFGLSGMKCLKVLSLSRNYIKQISGL 88
            :||:|..: :.|..||               :|:|.|.:|.||:.:..|..|:||.|.|.::.||
  Rat    36 LDSSLHAINLHCNNISKITSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRVEGL 100

  Fly    89 EAVAETLEELWLSYNLIEKIKGLT---GLKCLKVLYIS--NNLIKDWSEFNRLAE----IESLED 144
            ||:. .|..|.||||.|..:.||.   ||| .|:.||.  :|.|   ...:.|.:    :..|.:
  Rat   101 EALV-NLIRLNLSYNHISDLSGLIPLHGLK-YKLRYIDLHSNYI---DSIHHLLQCTVGLHFLTN 160

  Fly   145 LVV----VGNPLSEGLDEPTWRAECIKRLPTIRKLD-----GEPVVLNE 184
            |::    .|||:..   .|.:||..::.||.:|.||     ||||.|.|
  Rat   161 LILEKDGEGNPICL---VPGYRAIILQTLPQLRILDCKNIFGEPVSLEE 206

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG8800NP_610483.1 LRR_9 14..184 CDD:317038 58/178 (33%)
leucine-rich repeat 50..71 CDD:275380 9/36 (25%)
leucine-rich repeat 95..116 CDD:275380 12/24 (50%)
leucine-rich repeat 117..141 CDD:275380 6/30 (20%)
Lrrcc1NP_001094115.2 LRR_RI <32..142 CDD:238064 38/108 (35%)
leucine-rich repeat 40..61 CDD:275378 4/21 (19%)
LRR_4 61..101 CDD:289563 14/40 (35%)
leucine-rich repeat 62..83 CDD:275378 6/21 (29%)
LRR_8 82..142 CDD:290566 26/62 (42%)
leucine-rich repeat 84..105 CDD:275378 10/22 (45%)
leucine-rich repeat 106..131 CDD:275378 12/26 (46%)
leucine-rich repeat 132..145 CDD:275378 4/16 (25%)
leucine-rich repeat 158..188 CDD:275380 10/33 (30%)
SbcC 438..>1023 CDD:223496
DUF342 <817..893 CDD:302792
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR15454
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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