DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and hoxc13a

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_571618.1 Gene:hoxc13a / 58059 ZFINID:ZDB-GENE-000822-4 Length:306 Species:Danio rerio


Alignment Length:392 Identity:89/392 - (22%)
Similarity:128/392 - (32%) Gaps:146/392 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MERPAL-LQNGEIGTMESPTTRLASKPFPKPFSIESLIANQTPATATPPSPPEERDQEQEAEQEQ 64
            :..||| ..:|.|.|.:.......|.|       |:  ..|.||..|..|               
Zfish    50 ISHPALGRHSGTIATHQGSVYSDISSP-------ET--GRQCPAPQTSSS--------------- 90

  Fly    65 ELSARAMVASSALGLTQFPLYNPWLHGYFAQNHERLTHLIAGGCYLPSSPAG-HPAAQQPQAQAQ 128
                    ||.:.|   :|..||: :|.      ||:|  :....|...|.. |||.:..:..:.
Zfish    91 --------ASLSYG---YPFGNPY-YGC------RLSH--SHNVNLQQKPCSYHPAEKYAETSSA 135

  Fly   129 PQPPPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHSLSVHA 193
                   .||..|..:          .:...|.|:.|.      ||:.:...::...|.|:|||.
Zfish   136 -------LPTEELSSR----------AKEFAFYPSLAS------SYQAVPGYLDMSVVPSISVHP 177

  Fly   194 RLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSHSPMEP----ALDVGMDEDFECSGD 254
            ..:|.|..                                  |||.    ||..|.|....||.:
Zfish   178 EPRHDALI----------------------------------PMEGYQHWALSNGWDGQVYCSKE 208

  Fly   255 SCSDISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKS 319
            ......|..||                      ..|....|..               .||..:.
Zfish   209 QTQSSHLWKSP----------------------FPDVVPLQPE---------------VSSYRRG 236

  Fly   320 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRV--KAGLT 382
            |::|..:|..||.|||:|:.|.|:::..:|.:|:.:..|||.||.|||||||.|.|:.  |:...
Zfish   237 RKKRVPYTKIQLKELEKEYAASKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKFVSKSKTN 301

  Fly   383 SH 384
            :|
Zfish   302 NH 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 24/51 (47%)
hoxc13aNP_571618.1 HoxA13_N 34..144 CDD:463521 32/144 (22%)
Homeodomain 237..293 CDD:459649 26/55 (47%)

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