DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and msx2a

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001025440.1 Gene:msx2a / 573620 ZFINID:ZDB-GENE-980526-322 Length:257 Species:Danio rerio


Alignment Length:173 Identity:61/173 - (35%)
Similarity:84/173 - (48%) Gaps:28/173 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 HSSPAKS-------GSHSPMEPALDVGMDEDFECS--GDSCSDISLTMSPRNYNGEMDKSRNGAY 280
            |.|...|       ||.|....:|...:|......  .:|.|..|:.|: |..|.: |:|     
Zfish    18 HKSKVSSDEDDDDHGSRSVRTQSLPFSVDALMSTKERSESTSRGSIHMT-RIINQD-DRS----- 75

  Fly   281 TNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNS----------KSRRRRTAFTSEQLLELE 335
            ..|||.|.:  :..:|..|......|........|.|          .:|:.||.||:.|||.||
Zfish    76 IYSDSVDFT--KRCESAKEDSSWINKPRLSTSPRSQSPTICPLRKHKTNRKPRTPFTTAQLLALE 138

  Fly   336 REFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 378
            |:|..|:|||:.||::.::||.|:|.||||||||||||.||::
Zfish   139 RKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQ 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 32/51 (63%)
msx2aNP_001025440.1 Homeodomain 123..179 CDD:459649 34/55 (62%)

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