DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and hoxb3

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:294 Identity:77/294 - (26%)
Similarity:114/294 - (38%) Gaps:112/294 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PPQA----HSSPAKS---GSHSPMEPALDVGMDEDFECSGDSCSDISLTMSPRNYNGEMDKSRN- 277
            |.||    :..|.:|   .||          ||.:|:.|  |||..||     .::|.:.|::| 
 Frog    17 PYQAGSLGYEGPQQSFPTSSH----------MDNEFQRS--SCSLQSL-----GHSGPLVKAKNL 64

  Fly   278 -----------------------GAYTNSDSEDCSDDEGAQSRHEGGGMGG--------KDSQGN 311
                                   .:.|||.|...|..:.:.::.:..|...        |:|:.|
 Frog    65 NGSCMRPNLSSEQSQPLSPTANPSSNTNSSSSQASLSKPSPAKSQASGSPASKQIFPWMKESRQN 129

  Fly   312 GSS-------------------SNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLK 357
            ...                   .:|.|:|.|||:||.||:|||:|||..:||....|.::|..|.
 Frog   130 SKQKSSPPAPAAESCGGDRSPPGSSASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN 194

  Fly   358 LSEVQVKIWFQNRRAKWK---RVKAGLTSHGLGRNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEK 419
            |||.|:||||||||.|:|   :|| |::|...|.:.|::                          
 Frog   195 LSERQIKIWFQNRRMKYKKDQKVK-GMSSSSGGASPTST-------------------------- 232

  Fly   420 MCLSGPKPDLRKKLSAEAIGGFEKFSGSTNASSP 453
                   |.|..:.||..:|.....:.:..|.||
 Frog   233 -------PPLSMQSSAGFLGSMHSMTANYEAPSP 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 31/54 (57%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 32/55 (58%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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