DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Lim1

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster


Alignment Length:254 Identity:56/254 - (22%)
Similarity:87/254 - (34%) Gaps:70/254 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 DEDFECSGD-------SCSDISLTMS-------------------------------PRNYNGEM 272
            |..|.|..|       ||...||:.|                               |.:..|.:
  Fly   132 DNKFICKDDYLLGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPL 196

  Fly   273 DKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSS----SNSKSRRRRTAFTSEQLLE 333
            ..|.....:.|.....:.|:..|...:|...|..|||....|    :.||.|..||...::||..
  Fly   197 GTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEV 261

  Fly   334 LEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSHGLGRNGTTSGTKIV 398
            |:..|:.....:...|.|:|....|....:::||||:|:|.:|:|. :||  :||.....|.:.:
  Fly   262 LKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ-ITS--MGRPPFFGGARKM 323

  Fly   399 VPIPVHVNRFAVRSQHQQLEKMCLSGPKPDLRKKLSAEAIGGFEKFSGSTNASSPSGGP 457
            ...|::::...:.           .||              ||..|:.........|||
  Fly   324 RGFPMNLSPGGLD-----------DGP--------------GFPYFAADAKFEFGYGGP 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 15/51 (29%)
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761 3/8 (38%)
COG5576 185..324 CDD:227863 38/141 (27%)
Homeodomain 248..304 CDD:459649 17/55 (31%)
Blue background indicates that the domain is not in the aligned region.

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