DRSC/TRiP Functional Genomics Resources

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Protein Alignment: unpg and Hoxd4

Sequence 1:NP_477146.1 Gene:unpg FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001099355.1 Gene:Hoxd4 RGDID:1309690 Length:251 Species:Rattus norvegicus

Alignment Length:224 Identity:63/225 (28%)
Similarity:90/225 (40%) Gaps:72/225 (32%)


  Fly   211 PGMAQLQEPTPPQAH-SSPAKSGSHSPMEPALDVGMDEDFECSGDSCSDISLTMSPRNYNGEMDK 274
            ||.|     .|.:.| ..|:..|||              :...|:.|.    ...|....|    
  Rat    69 PGSA-----LPARGHGQEPSGPGSH--------------YSAPGEPCP----APPPAPLPG---- 106

  Fly   275 SRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKD-------------SQGNGSSSNSKSRRRRTAF 326
                      :..||...|.:....|..:  |.             :..|.:.:..:.:|.|||:
  Rat   107 ----------ARACSQPTGPKQPPPGTAL--KQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY 159

  Fly   327 TSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSHGL----G 387
            |.:|:||||:|||..:||:...|.:||.:|.|||.|:||||||||.|||:      .|.|    |
  Rat   160 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK------DHKLPNTKG 218

  Fly   388 RNGTTSGTKIVVPIPVHVNRFAVRSQHQQ 416
            |:.::|.:         .:..|..|||.|
  Rat   219 RSSSSSSS---------CSSSAAPSQHLQ 238

Known Domains:


GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 31/51 (61%)
Hoxd4NP_001099355.1 Homeobox 155..208 CDD:278475 32/53 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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