DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Hoxc6

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_063119084.1 Gene:Hoxc6 / 252885 RGDID:620626 Length:264 Species:Rattus norvegicus


Alignment Length:281 Identity:75/281 - (26%)
Similarity:101/281 - (35%) Gaps:108/281 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 YLPS-SPAGHPAAQQPQAQAQPQ---PPPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAP 169
            |:|. ||..:...::...|...|   ||||..|::...:....:|..|.::|             
  Rat    28 YIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSR------------- 79

  Fly   170 TDLSYRRLAELMNQDYVHSLSVHARLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSH 234
                                 .|...|    ||..|.:::.|    |.||.|     ....|.|.
  Rat    80 ---------------------AHGPAQ----AGHHHPEKSQP----LCEPAP-----LSGASASP 110

  Fly   235 SPMEPALDVGMDEDFECSGDSCSDISL---------TMSPRNYNGEMDKSRNGAYTNSDSEDCSD 290
            ||..||..... .|...|..|...|..         |::| ||||                    
  Rat   111 SPAPPACSQPA-PDHPSSAASKQPIVYPWMKKIHVSTVNP-NYNG-------------------- 153

  Fly   291 DEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATS 355
                                      .:.:|.|||:|.:|:||||:|||..:||:...|.:||.|
  Rat   154 --------------------------GEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHS 192

  Fly   356 LKLSEVQVKIWFQNRRAKWKR 376
            |.|||.|:||||||||.|||:
  Rat   193 LCLSERQIKIWFQNRRMKWKK 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 32/51 (63%)
Hoxc6XP_063119084.1 None

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