DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Cdx2

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_031699.2 Gene:Cdx2 / 12591 MGIID:88361 Length:311 Species:Mus musculus


Alignment Length:281 Identity:72/281 - (25%)
Similarity:105/281 - (37%) Gaps:83/281 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 AAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGS-----HSPMEPALDVGMDEDFECSGDSCSD 258
            |||........|.|     .|.....:||||:..:     |.|..||           :..||:.
Mouse    85 AAAANAVAHGLNGG-----SPAAAMGYSSPAEYHAHHHPHHHPHHPA-----------ASPSCAS 133

  Fly   259 ---ISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKSR 320
               .:|.:.|           .|....:.:|..|  ...|.|:....|.....|..||...::::
Mouse   134 GLLQTLNLGP-----------PGPAATAAAEQLS--PSGQRRNLCEWMRKPAQQSLGSQVKTRTK 185

  Fly   321 -RRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSH 384
             :.|..:|..|.||||:|||..:|:::..:|::|.:|.|||.||||||||||||.:::|      
Mouse   186 DKYRVVYTDHQRLELEKEFHFSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKIK------ 244

  Fly   385 GLGRNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEKMCLSGPKPD----------LRKKLSAEAIG 439
                                      :.|.||.::.....|:|.          ||.  ..|.:.
Mouse   245 --------------------------KKQQQQQQQQQQQPPQPPPQPSQPQPGALRS--VPEPLS 281

  Fly   440 GFEKFSGSTNASSPSG-GPVG 459
            ......||...|.|.. ||.|
Mouse   282 PVTSLQGSVPGSVPGVLGPAG 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 28/51 (55%)
Cdx2NP_031699.2 Caudal_act 13..178 CDD:461413 25/121 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..151 9/61 (15%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q99626 185..215 11/29 (38%)
Homeodomain 187..242 CDD:459649 29/54 (54%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q99626 227..241 12/13 (92%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..311 17/98 (17%)
4S motif, modulates transactivation activity and protein stability. /evidence=ECO:0000269|PubMed:16027724 281..293 2/11 (18%)

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