DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Cdx1

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_034010.3 Gene:Cdx1 / 12590 MGIID:88360 Length:268 Species:Mus musculus


Alignment Length:374 Identity:88/374 - (23%)
Similarity:121/374 - (32%) Gaps:136/374 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 PSSPAGHPAAQQPQAQAQPQPPPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYR 175
            |:.|:.........|...|.|.||..|..|....:.|. |.|..|...||      .||.|    
Mouse    17 PARPSSLGLGPPTYAPPGPAPAPPQYPDFAGYTHVEPA-PAPPPTWAAPF------PAPKD---- 70

  Fly   176 RLAELMNQDYVHSLSVHARLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSG-----SHS 235
                    |:.            ||.|        ||      ||...|..:|...|     |..
Mouse    71 --------DWA------------AAYG--------PG------PTASAASPAPLAFGPPPDFSPV 101

  Fly   236 PMEPALDVG-MDEDFECSGDSCSDISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHE 299
            |..|....| :.:.....|...|..:...:|..:   |.:|...|                    
Mouse   102 PAPPGPGPGILAQSLGAPGAPSSPGAPRRTPYEW---MRRSVAAA-------------------- 143

  Fly   300 GGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVK 364
            |||         ||.......:.|..:|..|.||||:|||..:|:::..:|::|.:|.|:|.|||
Mouse   144 GGG---------GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVK 199

  Fly   365 IWFQNRRAKWKRVKAGLTSHGLGRNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEKMCLSGPKPDL 429
            |||||||||.::|..                               :.|.||       .|.|..
Mouse   200 IWFQNRRAKERKVNK-------------------------------KKQQQQ-------QPLPPT 226

  Fly   430 RKKLSAEAIGGFEKFSGSTNASSPSGGPVGLGVGVGVGVGVGLGVSTPL 478
            :..|..:            ...:|||.|:|.......|:   ||..:|:
Mouse   227 QLPLPLD------------GTPTPSGPPLGSLCPTNAGL---LGTPSPV 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 27/51 (53%)
Cdx1NP_034010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..152 44/211 (21%)
Caudal_act 13..140 CDD:461413 37/170 (22%)
Homeodomain 156..211 CDD:459649 28/54 (52%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P47902 157..178 10/20 (50%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:P47902 196..207 9/10 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 209..268 16/105 (15%)

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