DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: unpg and hoxc3

Sequence 1:NP_477146.1 Gene:unpg FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis

Alignment Length:236 Identity:67/237 (28%)
Similarity:94/237 (40%) Gaps:72/237 (30%)


  Fly   208 QANPGMAQL-----------QEP---TPPQAHSSPAKSGSHS-----------------PMEPAL 241
            |.|.||..|           |.|   .|..|:.|.:..|.||                 |..|..
 Frog    21 QGNNGMGYLGQQDYPSEDDYQPPFCLPPDTANGSASHKGEHSIKGIDFHLSEVSEQAQQPKSPNS 85

  Fly   242 DVGMDEDFECSGDSC----------SDISL-------TMSPRNYNGEMDKSRNGAYTNSDSEDCS 289
            |..:.:  ..|..||          ||::.       :..|:.....|.::|..:.....:...:
 Frog    86 DSPLPK--SASTQSCTSKKSTGPVSSDVTSPNKKSKGSNMPKQIFPWMKETRQNSKQKKQAPPPA 148

  Fly   290 DDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAT 354
            ||..|.               :.|..:|.|:|.|||:|:.||:|||:|||..:||....|.::|.
 Frog   149 DDAPAV---------------DSSFLSSASKRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAK 198

  Fly   355 SLKLSEVQVKIWFQNRRAKWKRVKAGLTSH-GLGRNGTTSG 394
            .|.|||.|:||||||||.|:|:      .| |.|..|:..|
 Frog   199 LLNLSERQIKIWFQNRRMKFKK------DHKGKGGGGSPGG 233

Known Domains:


GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 29/51 (57%)
hoxc3XP_002936696.1 COG5576 113..>220 CDD:227863 41/122 (34%)
Homeobox 167..219 CDD:278475 30/52 (58%)
DUF4074 335..392 CDD:290032
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.