DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and hoxc3

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 / 100190990 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis


Alignment Length:236 Identity:67/236 - (28%)
Similarity:94/236 - (39%) Gaps:72/236 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 QANPGMAQL-----------QEP---TPPQAHSSPAKSGSHS-----------------PMEPAL 241
            |.|.||..|           |.|   .|..|:.|.:..|.||                 |..|..
 Frog    21 QGNNGMGYLGQQDYPSEDDYQPPFCLPPDTANGSASHKGEHSIKGIDFHLSEVSEQAQQPKSPNS 85

  Fly   242 DVGMDEDFECSGDSC----------SDISL-------TMSPRNYNGEMDKSRNGAYTNSDSEDCS 289
            |..:.:  ..|..||          ||::.       :..|:.....|.::|..:.....:...:
 Frog    86 DSPLPK--SASTQSCTSKKSTGPVSSDVTSPNKKSKGSNMPKQIFPWMKETRQNSKQKKQAPPPA 148

  Fly   290 DDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIAT 354
            ||..|.               :.|..:|.|:|.|||:|:.||:|||:|||..:||....|.::|.
 Frog   149 DDAPAV---------------DSSFLSSASKRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAK 198

  Fly   355 SLKLSEVQVKIWFQNRRAKWKRVKAGLTSH-GLGRNGTTSG 394
            .|.|||.|:||||||||.|:|:      .| |.|..|:..|
 Frog   199 LLNLSERQIKIWFQNRRMKFKK------DHKGKGGGGSPGG 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 29/51 (57%)
hoxc3XP_002936696.1 Homeodomain 164..220 CDD:459649 31/55 (56%)
DUF4074 335..392 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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