Protein Alignment Rad51D and Rad51

DIOPT Version :10

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001102674.1
• Gene: Rad51 / 499870
• RGDID: 1563603
• Length: 339
• Species: Rattus norvegicus
• Alignment Length: 343
• Identity: 80/343 - (23%)
• Similarity: 124/343 - (36%)
• Gaps: 117/343 - (34%)

  Fly    39 DEKKLHELW--------------AINIQSVRELKKE------LSLLPKGSVDEGTPDFN------ 77
            |.|||.|..              .|||:.:.|.|.:      ..|:|.|...  ..:|:
  Rat    37 DVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTT--ATEFHQRRSEI 99

  Fly    78 --YDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQA-----VLFID 135
              ..||.:||||||   :...:.|.:.|:.|:...||||:.:|||:.......:.     .::||
  Rat   100 IQITTGSKELDKLL---QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161

  Fly   136 TKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADIND---LLKSF--DH--QLTAETH 193
            |:..|..:|:.          ..:||        ...:|:|:.|   ..:.|  ||  ||..:..
  Rat   162 TEGTFRPERLL----------AVAER--------YGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

  Fly   194 ASM---QTKLVLIDSLAACF-AFYRGRRMRDVRKSVLTELACKIRKLALR-GVAFVIGNVSFFEN 253
            |.|   :..|:::||..|.: ..|.||.....|:..|......:.:||.. |||.||.|
  Rat   209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN------ 267

  Fly   254 NKDSCGDDGEQNGDDEEVTRQ----------QLEPMLGSYWSSVATLRLSVE------------- 295
                            :|..|          ..:|:.|:..:..:|.||.:.
  Rat   268 ----------------QVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYD 316

  Fly   296 ---LPEEED-FTLQDDGL 309
               |||.|. |.:..||:
  Rat   317 SPCLPEAEAMFAINADGV 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop containing Nucleoside Triphosphate Hydrolases	94..300	CDD:476819	54/248 (22%)
Rad51	NP_001102674.1	recomb_RAD51	25..339	CDD:274048	80/343 (23%)