Protein Alignment Rad51D and Rad51

DIOPT Version :8

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001102674.1
• Gene: Rad51 / 499870
• RGDID: 1563603
• Length: 339
• Species: Rattus norvegicus
• Alignment Length: 343
• Identity: 80/344 (23%)
• Similarity: 124/344 (36%)
• Gaps: 117/344 (34%)

  Fly    39 DEKKLHELW--------------AINIQSVRELKKE------LSLLPKGSVDEGTPDFN------ 77
            |.|||.|..              .|||:.:.|.|.:      ..|:|.|...  ..:|:
  Rat    37 DVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTT--ATEFHQRRSEI 99

  Fly    78 --YDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQA-----VLFID 135
              ..||.:||||||   :...:.|.:.|:.|:...||||:.:|||:.......:.     .::||
  Rat   100 IQITTGSKELDKLL---QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 161

  Fly   136 TKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADIND---LLKSF--DH--QLTAETH 193
            |:..|..:|:.          ..:||        ...:|:|:.|   ..:.|  ||  ||..:..
  Rat   162 TEGTFRPERLL----------AVAER--------YGLSGSDVLDNVAYARGFNTDHQTQLLYQAS 208

  Fly   194 ASM---QTKLVLIDSLAACF-AFYRGRRMRDVRKSVLTELACKIRKLALR-GVAFVIGNVSFFEN 253
            |.|   :..|:::||..|.: ..|.||.....|:..|......:.:||.. |||.||.|
  Rat   209 AMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN------ 267

  Fly   254 NKDSCGDDGEQNGDDEEVTRQ----------QLEPMLGSYWSSVATLRLSVE------------- 295
                            :|..|          ..:|:.|:..:..:|.||.:.
  Rat   268 ----------------QVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYD 316

  Fly   296 ---LPEEED-FTLQDDGL 309
               |||.|. |.:..||:
  Rat   317 SPCLPEAEAMFAINADGV 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	66/275 (24%)
		radB	80..335	CDD:236482	66/275 (24%)
Rad51	NP_001102674.1	recomb_RAD51	25..339	CDD:274048	80/344 (23%)
		HHH_5	32..80	CDD:291205	10/43 (23%)
		Rad51_DMC1_radA	102..335	CDD:238543	66/277 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_COG0468
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900