Protein Alignment Rad51D and rhp55

DIOPT Version :9

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_593604.1
• Gene: rhp55 / 2543685
• PomBaseID: SPAC3C7.03c
• Length: 350
• Species: Schizosaccharomyces pombe
• Alignment Length: 207
• Identity: 51/207 - (24%)
• Similarity: 94/207 - (45%)
• Gaps: 44/207 - (21%)

  Fly    74 PDFNYDTGIEELDKLLDSV--EQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQAVLFIDT 136
            |.|.:::      ||||..  ....|.|.:.|:||.||:|||.|...:..|.:...|: |::::|
pombe    23 PGFGFNS------KLLDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSR-VIWVET 80

  Fly   137 KREFSCKRIQDML-----RAREVDEEA-SERAMKGIRVVQAATGADINDLLKSFDHQLTAETHAS 195
            .:....:|::.:|     .:::.:|:. ::..:..:.||.|....:|...|::||.    |.|..
pombe    81 CQPIPMERLRQLLDNHVPSSQDEEEKCDTDELLNLLDVVYAPNLVNILAFLRNFDQ----EKHLK 141

  Fly   196 MQTKLVLIDSLA-----------ACFAFYRGRRMRDVRKSVLTELACKIRKLALRGVAFVIGNVS 249
             :..|::||:|:           ..:|:.|.|| ...:||.|::.:.|...|.|.
pombe   142 -EIGLLIIDNLSMPIQLAYPTSPEDYAYLRLRR-NTSKKSSLSDSSQKENTLTLN---------- 194

  Fly   250 FFENNKDSCGDD 261
              :.|:.|..||
pombe   195 --KENEFSSKDD 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	49/201 (24%)
		radB	80..335	CDD:236482	49/201 (24%)
rhp55	NP_593604.1	RecA	1..295	CDD:223544	51/207 (25%)
		P-loop_NTPase	29..327	CDD:304359	49/201 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0468
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0006192
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4853
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.840