Protein Alignment Rad51D and rfs-1

DIOPT Version :9

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001370362.1
• Gene: rfs-1 / 24104262
• WormBaseID: WBGene00004342
• Length: 245
• Species: Caenorhabditis elegans
• Alignment Length: 287
• Identity: 59/287 - (20%)
• Similarity: 104/287 - (36%)
• Gaps: 112/287 - (39%)

  Fly    76 FNYDTGIEELDKL-------------LDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFV--- 124
            |.|:|..:.|.:|             ||.|.: ..||:.:|:.|..||||||:.|:.|..|:
 Worm     8 FKYETAYDLLVRLGAERLFLRTCLSILDPVLE-LHPGKCYEIDGDLGVGKTQICYSFAAKFLQTK 71

  Fly   125 ------W------KHSQAVLFI---------DTKREFSCKRIQDMLRAREVDEEASERAMKGIRV 168
                  |      :....:|.|         |......|||::.:
 Worm    72 KTAKMGWIGATPLRTDHLLLHIEHFGNQTNEDILDRIVCKRVEKI-------------------- 116

  Fly   169 VQAATGADINDLLKSF-DHQLTAETHASMQTKLVLIDSLAACF--AFYRGRRMRDVRKSVLTELA 230
                  |::.|.|..| |         ::..:||:::::.|..  ..|.    :::.:|:.:::.
 Worm   117 ------AELQDSLTRFLD---------TINLQLVIVENIDAILHDTVYH----KEMGRSMQSDVV 162

  Fly   231 CKIRKLALRGVAFVIGNVSFFENNKDSCGDDGEQNGDDEEVT--RQQLEPMLGSYWSSVATLRLS 293
            .:||||....:..::.|                      .:|  |....|.||::|||....|..
 Worm   163 ERIRKLTKLEITVILTN----------------------HITHWRGYPAPALGAFWSSQINNRFF 205

  Fly   294 VE-LPEEEDFTL-------QDDGLRFI 312
            :| ..::.|..:       ||||:..|
 Worm   206 IEKRNDDSDIRIVSAMKGEQDDGMNRI 232

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	57/283 (20%)
		radB	80..335	CDD:236482	57/283 (20%)
rfs-1	NP_001370362.1	P-loop_NTPase	40..214	CDD:422963	45/234 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S4311
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_105130
Panther	1	1.100	-	-	LDO	PTHR46457
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.860