DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: Lcp3 and Cpr12A

Sequence 1:NP_001260803.1 Gene:Lcp3 FlyBaseID:FBgn0002534 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_572896.1 Gene:Cpr12A FlyBaseID:FBgn0030494 Length:173 Species:Drosophila melanogaster

Alignment Length:116 Identity:30/117 (26%)
Similarity:52/117 (44%) Gaps:23/117 (20%)


  Fly     1 MFKILLVCSLAALVAANANVEVKELVNDVQ---------PDG-FVSKLVLDDGSASSATG----- 50
            :|.|.|:.  |.|::|.   ::||.....:         ||| :..:..||||:|....|     
  Fly     8 LFAIFLLS--ATLISAQ---QIKESAPSARLLDRFDNRYPDGSYEYRFELDDGTARYERGYFVKI 67

  Fly    51 -DIHG-NIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTP-PPIPAAI 98
             |:.. .:.|.:.:...:|.::.|.|.||:.||:....:.|.. |.:|.:|
  Fly    68 NDVKTLMVVGYYAYRMTDGRYITVFYNADQFGYRQNQSITPQEYPNLPRSI 118

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Lcp3NP_001260803.1 Chitin_bind_4 40..81 CDD:278791 14/48 (29%)
Cpr12ANP_572896.1 Chitin_bind_4 46..100 CDD:278791 14/54 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C48282
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10380
RoundUp 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.