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Protein Alignment Pabp2 and T08B6.1
DIOPT Version :10
| Sequence 1: | NP_476902.1 |
Gene: | Pabp2 / 35788 |
FlyBaseID: | FBgn0005648 |
Length: | 224 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_500665.2 |
Gene: | T08B6.1 / 188275 |
WormBaseID: | WBGene00020351 |
Length: | 96 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 83 |
Identity: | 23/83 - (27%) |
| Similarity: | 35/83 - (42%) |
Gaps: | 23/83 - (27%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 152 TALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRA----- 211
:||.::...||.|::.|.:||||:||...|. .||:.||:..|..:|.
Worm 27 SALVLSGFKFRNRKVTVTTKRTNKPGFGKTT-------------ASRSQCHAKPRPGQRVTIVKY 78
Fly 212 MGYRGRANYY-----APY 224
:......|.: |||
Worm 79 VNVNATVNVFKSKRSAPY 96
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Pabp2 | NP_476902.1 |
DNA_pol_phi |
<3..68 |
CDD:461488 |
|
| RRM_II_PABPN1 |
97..172 |
CDD:409966 |
6/19 (32%) |
| T08B6.1 | NP_500665.2 |
None |
|
Blue background indicates that the domain is not in
the aligned region.
|
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