DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: Pabp2 and T08B6.1

Sequence 1:NP_476902.1 Gene:Pabp2 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_500665.2 Gene:T08B6.1 WormBaseID:WBGene00020351 Length:96 Species:Caenorhabditis elegans

Alignment Length:83 Identity:23/84 (27%)
Similarity:35/84 (42%) Gaps:23/84 (27%)


  Fly   152 TALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRA----- 211
            :||.::...||.|::.|.:||||:||...|.             .||:.||:..|..:|.     
 Worm    27 SALVLSGFKFRNRKVTVTTKRTNKPGFGKTT-------------ASRSQCHAKPRPGQRVTIVKY 78

  Fly   212 MGYRGRANYY-----APY 224
            :......|.:     |||
 Worm    79 VNVNATVNVFKSKRSAPY 96

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 RRM <43..>172 CDD:223796 7/20 (35%)
RRM_II_PABPN1 97..172 CDD:240994 7/20 (35%)
T08B6.1NP_500665.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG4209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.