DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Pabp2 and ZK1225.5

Sequence 1:NP_476902.1 Gene:Pabp2 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_493317.1 Gene:ZK1225.5 WormBaseID:WBGene00014239 Length:511 Species:Caenorhabditis elegans

Alignment Length:62 Identity:12/63 (19%)
Similarity:26/63 (41%) Gaps:9/63 (14%)


  Fly    24 QETEIATEVEEEGSMQIDPELEAIK--ARVKEMEEEAEKI-------KQMQSEVDKQMAGGS 76
            :.|:|..::.|....::|...:..|  ..:..|:.|...|       ..:.:::|.|:..||
 Worm   199 ENTDIFLDLHETDPERVDTRKKVFKHFYELFTMDREESVIPFNWLSYTGVSADLDIQVCHGS 260

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Pabp2NP_476902.1 RRM <43..>172 CDD:223796 8/44 (18%)
RRM_II_PABPN1 97..172 CDD:240994
ZK1225.5NP_493317.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG4209
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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