DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pbp49 and Snapc3

DIOPT Version :10

Sequence 1:NP_610357.1 Gene:Pbp49 / 35787 FlyBaseID:FBgn0260398 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001013230.1 Gene:Snapc3 / 362537 RGDID:1305172 Length:407 Species:Rattus norvegicus


Alignment Length:271 Identity:84/271 - (30%)
Similarity:126/271 - (46%) Gaps:26/271 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 RKCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRP----PRAYHRGFKVEIPVFAEEFV 160
            |:..|.....||.|...| ::|...|:. ||..|:|.:..|    ....|:.:        :..:
  Rat   147 RQETFAYEMESHALGKKP-ENPADMIEE-GESILSVNILYPVIFNKHREHKPY--------QTVL 201

  Fly   161 CLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN---PGYFFINDTFYNDQRNPDNPDY 222
            .|||..||||||.|.||.:.:...:.|:.||.....|..:   ..:|:...|||||:|.|:..|.
  Rat   202 VLGSQKLTELRDSICCVSDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDL 266

  Fly   223 SKTVLQWAARANGVNGETLKVESMEGKRFIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSK 287
            |:|:::|:...:...|: .:...||...|.||.:..|.|..|.|.|:|||:.||:.:. |.....
  Rat   267 SRTIIEWSESHDRGYGK-FQTARMEDFTFNDLNIKLGFPYLYCHQGDCEHVVVITDIR-LVHHDD 329

  Fly   288 RPDRSLYPY---PHAFSTFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFY-VDGVK 348
            ..||:|||.   .|...|   |.|::|.:.:..::.|.......||.:.|..||....| .:|.|
  Rat   330 CLDRTLYPLLTKKHWLWT---RKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCFRMLHYDSEGNK 391

  Fly   349 LGQFKAYRMYD 359
            ||:|.||...|
  Rat   392 LGEFLAYPYVD 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pbp49NP_610357.1 SNAPC3 157..358 CDD:463506 69/207 (33%)
Snapc3NP_001013230.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
SNAPC3 198..401 CDD:463506 69/207 (33%)
Blue background indicates that the domain is not in the aligned region.

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