DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odc1 and Ldc1

DIOPT Version :9

Sequence 1:NP_477052.2 Gene:Odc1 / 35766 FlyBaseID:FBgn0013307 Length:394 Species:Drosophila melanogaster
Sequence 2:XP_232777.5 Gene:Ldc1 / 297899 RGDID:1562036 Length:457 Species:Rattus norvegicus


Alignment Length:391 Identity:157/391 - (40%)
Similarity:230/391 - (58%) Gaps:19/391 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RELNIRRVIEECDLQRLDQALNICDLSSVERKLRLWQKLLPRIKPFYAVKCNDDPMVVRLLAQLG 77
            |:|.::: |::..:........:.||..:..:.:.:.:.|||:.||||||||:.|.::.:||.||
  Rat    65 RQLVLKK-IQDLSISGHQDPFMVADLDVLASRHQTFLQALPRVWPFYAVKCNNRPSLLLVLAALG 128

  Fly    78 AGFDCASKNEVKLVLGFDVSPERIIFANPCRPVSHLEYAKEHQVSNGTVDNEFEVYKLHTHYPNS 142
            .||||||:.|::.|||..|:|.||||||||:.|||::||....|...|.|:|.|:.||..|:|.:
  Rat   129 TGFDCASQGELEQVLGLGVAPSRIIFANPCKAVSHIQYAARCGVQLLTFDSEEELTKLARHHPGA 193

  Fly   143 NLIVRFKSEAKEAQCPLGDKFGCDADVDAAALMLLAKSLELKVTGTSFHVGSGCSELQAYDRAIK 207
            .||:|.::....:..||..|||... :....|:.:|:.|.|.|.|.||||||.|...|:|.:||.
  Rat   194 RLILRIQTLGGRSTFPLHTKFGARL-LACGRLLQVARELGLAVVGASFHVGSDCHTPQSYRQAIA 257

  Fly   208 KAKNLFKFGALLGYDMDFLDIGGGFPG--SDDVKFEKIAESVNTSVQRHFPD-ERVHIIAEPGRF 269
            ....:|:.|...|:.|..||:||||||  ..:.|||::|..||.::.::||: ..|.:|||||||
  Rat   258 DCHRVFEMGCKAGHQMSLLDLGGGFPGIEGSEAKFEEMARVVNAALAQYFPEGTGVEVIAEPGRF 322

  Fly   270 FVAAACTLVCKIHAKREIRNEAGKLDTVMYYLNDGVYGSFNCILYDH----QVVIAEHYLDNAES 330
            :..:.||....|.||: ...|.|....:.||||:|.||:|...|.|.    .:|:.|     ..|
  Rat   323 YAESVCTAAVNIIAKK-ASLEPGGHRKLAYYLNEGHYGAFRIFLRDPVPRIPIVVKE-----LPS 381

  Fly   331 LPHL-KSLIWGPSCDALDKI-SEDLHLPNLNRGDLLGFRNMGAYTMPIASAFNGFEVPKTLYFQA 393
            .||| ...::||:|||.|:: |.::.||.|:.||.|.|.:||||...::|.||||  |.|..:.|
  Rat   382 DPHLFPCTLYGPTCDAFDRLFSTEVQLPELDVGDWLVFPDMGAYRSTMSSTFNGF--PITTVYDA 444

  Fly   394 I 394
            :
  Rat   445 M 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Odc1NP_477052.2 PLPDE_III_ODC 30..391 CDD:143482 153/369 (41%)
Ldc1XP_232777.5 PLPDE_III_ODC 82..442 CDD:143482 153/368 (42%)

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