DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup44A and AT3G01340

DIOPT Version :10

Sequence 1:NP_610343.1 Gene:Nup44A / 35762 FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_186783.1 Gene:AT3G01340 / 821216 AraportID:AT3G01340 Length:302 Species:Arabidopsis thaliana


Alignment Length:330 Identity:99/330 - (30%)
Similarity:157/330 - (47%) Gaps:52/330 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSWAHPE 69
            :.|...|.|.|||||.||||:|:||.|||.|:||......|.....::...|.|.:|:|:||||:
plant     4 QKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVWQVAWAHPK 68

  Fly    70 FGQVVATCSFDRTASVWEEVIGEKVSSTNTPTRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATA 134
            ||.::|:||:|....:|:|  |.:        .:|.:.....|.:.||..:.:||..|||.||..
plant    69 FGSLLASCSYDGQIILWKE--GNQ--------NQWTQAHVFTDHKVSVNSIAWAPHELGLSLACG 123

  Fly   135 SADGIIRIYEAP-----DIMNLSQWPVQHEISNKLPLSCLSWNTSTY-----------MVTQLLA 183
            ::||.|.::.|.     |...:.|       ::.:.::.:||..:|.           .|.:|.:
plant   124 ASDGNISVFSARADGGWDTTKIDQ-------AHPVGVTSVSWAPATEPGALVSSGMIDPVYKLAS 181

  Fly   184 AGSDEAATPTGKVFLFAYSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKD----L 244
            .|.|.    |.||:.|  |..|.|......:|..||.|.|||:|||.|.....:|..|:|    :
plant   182 GGCDS----TVKVWKF--SNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

  Fly   245 YIVNLRGVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQWRC 309
            :.:...|......:.| |.:|        |||||.|::...:|..:..:..|.:|:.:.:.:|..
plant   241 WTIGKEGEQWEGTVLK-DFKT--------PVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQ 296

  Fly   310 AAVLK 314
            ..|::
plant   297 VTVVE 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 <8..302 CDD:441893 96/313 (31%)
WD40 repeat 16..55 CDD:293791 18/38 (47%)
WD40 repeat 60..98 CDD:293791 15/37 (41%)
WD40 repeat 118..159 CDD:293791 13/45 (29%)
WD40 repeat 166..212 CDD:293791 14/56 (25%)
WD40 repeat 221..267 CDD:293791 15/49 (31%)
WD40 repeat 275..299 CDD:293791 7/23 (30%)
AT3G01340NP_186783.1 WD40 <8..286 CDD:441893 95/309 (31%)
WD40 repeat 15..54 CDD:293791 18/38 (47%)
WD40 repeat 59..101 CDD:293791 16/51 (31%)
WD40 repeat 107..148 CDD:293791 13/47 (28%)
WD40 repeat 153..207 CDD:293791 14/59 (24%)
WD40 repeat 214..251 CDD:293791 11/36 (31%)

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