DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Nup44A and Tmsb10

Sequence 1:NP_610343.1 Gene:Nup44A FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_067084.1 Gene:Tmsb10 RGDID:62022 Length:44 Species:Rattus norvegicus

Alignment Length:57 Identity:11/58 (19%)
Similarity:23/58 (40%) Gaps:23/58 (40%)


  Fly    68 PEFGQVVATCSFDRTASVWEEVIGEKVSSTNT------PTRRWVRRTTLVDSRTSVT 118
            |:.|::   .|||:.          |:..|.|      ||:..:.:    :.|:.::
  Rat     5 PDMGEI---ASFDKA----------KLKKTETQEKNTLPTKETIEQ----EKRSEIS 44

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 6..>309 CDD:225201 11/58 (19%)
WD40 11..300 CDD:295369 11/58 (19%)
WD40 repeat 16..55 CDD:293791
WD40 repeat 60..98 CDD:293791 7/30 (23%)
WD40 repeat 118..159 CDD:293791 0/2 (0%)
WD40 repeat 166..212 CDD:293791
WD40 repeat 221..267 CDD:293791
WD40 repeat 275..299 CDD:293791
Tmsb10NP_067084.1 Thymosin 3..41 CDD:334475 11/53 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 OOG5_130934
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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