DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup44A and seh1l

DIOPT Version :9

Sequence 1:NP_610343.1 Gene:Nup44A / 35762 FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:XP_021323675.1 Gene:seh1l / 334749 ZFINID:ZDB-GENE-030131-6689 Length:410 Species:Danio rerio


Alignment Length:362 Identity:191/362 - (52%)
Similarity:260/362 - (71%) Gaps:25/362 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSW 65
            ||..:.|.|||||:||||.:|::|||||||||||:||:||:...|:|:.|:|||.||||:|||:|
Zfish     1 MFVAKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTW 65

  Fly    66 AHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTPTR---RWVRRTTLVDSRTSVTDVEFAPKYL 127
            ||||||||:|:|||||||:||||::||    :|...|   .|::||||||||||||||:||||::
Zfish    66 AHPEFGQVLASCSFDRTAAVWEEIVGE----SNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHM 126

  Fly   128 GLLLATASADGIIRIYEAPDIMNLSQWPVQHEISNKLPLSCLSWNTSTYMV-TQLLAAGSDEA-A 190
            ||:|.|.||||::|||||||:||||||.:|||||.||..||:|||.|:... ..::|.|.|:: .
Zfish   127 GLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLACSCISWNPSSSRAHPPMIAVGGDDSNG 191

  Fly   191 TPTGKVFLFAYSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNL----RG 251
            ..:|||.:..|:||:||..|.:|:..:||||.|:|||||.||:||:||:|:||:.|..|    |.
Zfish   192 AYSGKVQIHEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRE 256

  Fly   252 VTDATDISKLDIQTI-KFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQWRCAAVLKA 315
            ..:::..:|.::|.: :|..||..||||.||:.:|:|.|:|||||||||:.||...|:|..:|:.
Zfish   257 SANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNWKCTGILRG 321

  Fly   316 EGSGPTYEPAPPTPTLAT----------TASATAKFY 342
            :|| |....:.|:..|:.          ..:|||..|
Zfish   322 DGS-PVNGSSGPSAALSAVGVPGAAQMIVGAATAGRY 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 11..300 CDD:392136 171/298 (57%)
WD40 repeat 16..55 CDD:293791 24/38 (63%)
WD40 repeat 60..98 CDD:293791 26/37 (70%)
WD40 repeat 118..159 CDD:293791 29/40 (73%)
WD40 repeat 166..212 CDD:293791 18/47 (38%)
WD40 repeat 221..267 CDD:293791 21/50 (42%)
WD40 repeat 275..299 CDD:293791 16/23 (70%)
seh1lXP_021323675.1 WD40 11..306 CDD:330360 171/298 (57%)
WD40 repeat 15..55 CDD:293791 25/39 (64%)
WD40 repeat 61..111 CDD:293791 33/53 (62%)
WD40 repeat 116..149 CDD:293791 23/32 (72%)
WD40 repeat 166..212 CDD:293791 17/45 (38%)
WD40 repeat 222..275 CDD:293791 21/52 (40%)
WD40 repeat 281..307 CDD:293791 18/25 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582004
Domainoid 1 1.000 266 1.000 Domainoid score I1847
eggNOG 1 0.900 - - E1_KOG2445
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68701
Inparanoid 1 1.050 396 1.000 Inparanoid score I1919
OMA 1 1.010 - - QHG55323
OrthoDB 1 1.010 - - D375879at33208
OrthoFinder 1 1.000 - - FOG0004075
OrthoInspector 1 1.000 - - oto40464
orthoMCL 1 0.900 - - OOG6_103638
Panther 1 1.100 - - LDO PTHR11024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1316
SonicParanoid 1 1.000 - - X3915
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

Return to query results.
Submit another query.