DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup44A and seh1l

DIOPT Version :10

Sequence 1:NP_610343.1 Gene:Nup44A / 35762 FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:XP_073786690.1 Gene:seh1l / 334749 ZFINID:ZDB-GENE-030131-6689 Length:410 Species:Danio rerio


Alignment Length:362 Identity:191/362 - (52%)
Similarity:260/362 - (71%) Gaps:25/362 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSW 65
            ||..:.|.|||||:||||.:|::|||||||||||:||:||:...|:|:.|:|||.||||:|||:|
Zfish     1 MFVAKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTW 65

  Fly    66 AHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTPTR---RWVRRTTLVDSRTSVTDVEFAPKYL 127
            ||||||||:|:|||||||:||||::||    :|...|   .|::||||||||||||||:||||::
Zfish    66 AHPEFGQVLASCSFDRTAAVWEEIVGE----SNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHM 126

  Fly   128 GLLLATASADGIIRIYEAPDIMNLSQWPVQHEISNKLPLSCLSWNTSTYMV-TQLLAAGSDEA-A 190
            ||:|.|.||||::|||||||:||||||.:|||||.||..||:|||.|:... ..::|.|.|:: .
Zfish   127 GLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLACSCISWNPSSSRAHPPMIAVGGDDSNG 191

  Fly   191 TPTGKVFLFAYSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNL----RG 251
            ..:|||.:..|:||:||..|.:|:..:||||.|:|||||.||:||:||:|:||:.|..|    |.
Zfish   192 AYSGKVQIHEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRE 256

  Fly   252 VTDATDISKLDIQTI-KFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQWRCAAVLKA 315
            ..:::..:|.::|.: :|..||..||||.||:.:|:|.|:|||||||||:.||...|:|..:|:.
Zfish   257 SANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNWKCTGILRG 321

  Fly   316 EGSGPTYEPAPPTPTLAT----------TASATAKFY 342
            :|| |....:.|:..|:.          ..:|||..|
Zfish   322 DGS-PVNGSSGPSAALSAVGVPGAAQMIVGAATAGRY 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 <8..302 CDD:441893 174/303 (57%)
WD40 repeat 16..55 CDD:293791 24/38 (63%)
WD40 repeat 60..98 CDD:293791 26/37 (70%)
WD40 repeat 118..159 CDD:293791 29/40 (73%)
WD40 repeat 166..212 CDD:293791 18/47 (38%)
WD40 repeat 221..267 CDD:293791 21/50 (42%)
WD40 repeat 275..299 CDD:293791 16/23 (70%)
seh1lXP_073786690.1 None

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