DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Nup44A and npp-20

Sequence 1:NP_610343.1 Gene:Nup44A FlyBaseID:FBgn0033247 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_500086.1 Gene:npp-20 WormBaseID:WBGene00003806 Length:313 Species:Caenorhabditis elegans

Alignment Length:310 Identity:87/311 (28%)
Similarity:143/311 (46%) Gaps:37/311 (12%)


  Fly     7 IIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSWAHPEFG 71
            |...|:|.|||...:.||.|:|||.||:.|||::....|:....:....|||.:|:||||||::|
 Worm     8 IDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNGQSYPMAELVGHSGPVWKVSWAHPKYG 72

  Fly    72 QVVATCSFDRTASVWEEVIGEKVSSTNTPTRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASA 136
            .::|:.|:|:...:|.|..|           ||.:.........|.|.|.|||...||:||:|||
 Worm    73 GLLASASYDKKVIIWNEQQG-----------RWQKAYEWAAHEASTTCVAFAPHQYGLMLASASA 126

  Fly   137 DGIIRIYEAPDIMNLSQWPVQHEISNKLP------LSCLSW---NTSTYMVTQLLAAGSDEAATP 192
            ||.|.|....:..|  :|     ||:|:.      ::.:.|   :.......:|::||:|:    
 Worm   127 DGDIGILRYDNSSN--EW-----ISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDK---- 180

  Fly   193 TGKVFLFAYSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLRGVTDATD 257
              .|.::|:.:.:.:.:...|:...||.|.:.|:.|......|.:.....:..:|..|.....|:
 Worm   181 --NVKIWAFDDATNEWILEKTLAGHTDFVREAAWCPVTNNGQHTIVSCGMEGNLVLFRTSNIETE 243

  Fly   258 ISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQW 307
            ..|..:    .....|.::...::...:.|...|||..:.:||.|...||
 Worm   244 EWKAKL----LETAPCALYHSSFSPCGSFLSVAGDDNVITIWRENLQGQW 289

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Nup44ANP_610343.1 WD40 6..>309 CDD:225201 87/311 (28%)
WD40 11..300 CDD:295369 82/298 (28%)
WD40 repeat 16..55 CDD:293791 14/39 (36%)
WD40 repeat 60..98 CDD:293791 14/38 (37%)
WD40 repeat 118..159 CDD:293791 18/41 (44%)
WD40 repeat 166..212 CDD:293791 7/49 (14%)
WD40 repeat 221..267 CDD:293791 8/46 (17%)
WD40 repeat 275..299 CDD:293791 4/24 (17%)
npp-20NP_500086.1 WD40 4..>285 CDD:225201 85/305 (28%)
WD40 12..282 CDD:295369 82/298 (28%)
WD40 repeat 61..102 CDD:293791 16/52 (31%)
WD40 repeat 108..150 CDD:293791 21/49 (43%)
WD40 repeat 155..201 CDD:293791 8/52 (15%)
WD40 repeat 212..250 CDD:293791 6/42 (14%)
WD40 repeat 257..288 CDD:293791 7/31 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 D375879at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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