DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and YTA12

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_013807.1 Gene:YTA12 / 855114 SGDID:S000004695 Length:825 Species:Saccharomyces cerevisiae


Alignment Length:386 Identity:126/386 - (32%)
Similarity:187/386 - (48%) Gaps:44/386 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 YGQSQYHKSIKSIEEDIQKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTK 100
            ||::.|:.:|.||:....|..|..:||    :.|.....|.|:              :|.....|
Yeast   247 YGRNFYYFTIGSIDSFEHKLQKAQDEL----DIDKDFRIPVLY--------------VQEGNWAK 293

  Fly   101 IINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQ 165
            .:.      :.:..|...|..:.....|........|...|:.|:|              .....
Yeast   294 AMF------QILPTVLMIAGIIWLTRRSAQAAGGSRGGIFGLSRSK--------------AKKFN 338

  Fly   166 VEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 230
            .|....:.:.||.||.|..|::.|.|.. |..|.::..:|.:.|:|.:|.|||||||||.|:|.|
Yeast   339 TETDVKIKFKDVAGCDEAKEEIMEFVSF-LKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATA 402

  Fly   231 NRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDG-AGGDNE 294
            ......|..|.|||.|:.:||.||..||:||:.||.....::|.|||||||.||.... :|.::|
Yeast   403 GEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDE 467

  Fly   295 VQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHA 359
            .:.|:.:::.::|||.|..::.||..|||||.||.||:||||.||.:....|:.:||..||.:|.
Yeast   468 RENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHL 532

  Fly   360 RSMSVERDIRFDL---LARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVI 417
            ..:.:..:| |||   ||.|.|..:||:|.:||.||.:.|.|:.........|.:|:::||
Yeast   533 HHLKLAGEI-FDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVI 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 113/334 (34%)
YTA12NP_013807.1 FtsH_ext <205..282 CDD:377663 11/38 (29%)
FtsH_fam 290..784 CDD:273520 112/325 (34%)

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