DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt1 and psmc5

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001003740.1 Gene:psmc5 / 445285 ZFINID:ZDB-GENE-030131-6547 Length:406 Species:Danio rerio


Alignment Length:408 Identity:196/408 - (48%)
Similarity:263/408 - (64%) Gaps:29/408 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IKSLDEGDIELLK-TYGQSQYHKSIKSIEE----------DIQKAVKQVNELTGIKESDTGLAPP 75
            :..:::.|||..| ..|..||:  :..|||          ::::...|.|||.         |..
Zfish     3 LDGIEQMDIEDSKGGSGLRQYY--LSKIEELQLTVNEKSQNLRRLQAQRNELN---------AKV 56

  Fly    76 ALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRV 140
            .|  |..:.|:|| ||...|....:.:    |..|.::.|....|||||:..::...|:....||
Zfish    57 RL--LREELQLLQ-EQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRV 114

  Fly   141 GVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLG 205
            .:..:.|.:|..||.|:||.|::|.||..||.||..:||..:||::::||:|.|:.|||.|..||
Zfish   115 ALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG 179

  Fly   206 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKAC 270
            |..||||||:|||||||||.|||||:.||..||||.|||||||::|||||||||||.|||.....
Zfish   180 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244

  Fly   271 LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPG 335
            :||.||||:||.:|.:.|:|||:|||||||||:||||||:...||||:|||||.|.||.||:|||
Zfish   245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPG 309

  Fly   336 RLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRAR 400
            |:|||:||..|:::.|..|.|||:|.|::.|.|....:|.|.|.::|||::.|||||||:|:|.|
Zfish   310 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 374

  Fly   401 RKVATEKDFLEAVKKVIK 418
            |...|::||..||.||::
Zfish   375 RVHVTQEDFEMAVAKVMQ 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 177/331 (53%)
psmc5NP_001003740.1 PRK03992 24..400 CDD:179699 189/387 (49%)

Return to query results.
Submit another query.