DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and psmc4

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_956044.2 Gene:psmc4 / 326884 ZFINID:ZDB-GENE-030131-5083 Length:418 Species:Danio rerio


Alignment Length:433 Identity:161/433 - (37%)
Similarity:232/433 - (53%) Gaps:100/433 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DYLGDDQRKVK----HDEKEDKEIKSL-----------DEGDIELLKTYGQSQYHKSIKSIEEDI 52
            :|:.|:|:.:|    |.::|.|.|:|:           |:....:..|.|.:.|.:.:.:|:.::
Zfish    59 EYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDREL 123

  Fly    53 QKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQ 117
            .|                                                      |...:.:.:
Zfish   124 LK------------------------------------------------------PNASVALHK 134

  Fly   118 FAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKE 182
            .:..:||:                           |||:.|.::.|:..:.||||.|||:||...
Zfish   135 HSNALVDV---------------------------LPPEADSSIMMLTSDQKPDVLYSDIGGMDI 172

  Fly   183 QIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 247
            |.:::||.||.||.|.|.:..:||:||:|||::||||.|||:.|:|||:.|.|.||||:|||.||
Zfish   173 QKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ 237

  Fly   248 KYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 312
            ||:|||.||||::|.:|:.....:||.||||||...|||...|.|.||||.:|||:||:||||..
Zfish   238 KYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQN 302

  Fly   313 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRF-DLLARL 376
            .|:||:|||||.|||||||:||||||||:||.|||:..:..:|......|::..::.. |.:|| 
Zfish   303 VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEEVDLEDYVAR- 366

  Fly   377 CPNS-TGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
             |:. :||:|.|:|.||||.|:|..|.:...|||.:|.|.|||
Zfish   367 -PDKISGADINSICQEAGMLAVRENRYIVLAKDFEKAYKTVIK 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 146/333 (44%)
psmc4NP_956044.2 PTZ00454 34..418 CDD:240423 161/433 (37%)

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