DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt1 and rpt-4

DIOPT Version :10

Sequence 1:NP_477473.1 Gene:Rpt1 / 35701 FlyBaseID:FBgn0028687 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001022113.1 Gene:rpt-4 / 173384 WormBaseID:WBGene00004504 Length:406 Species:Caenorhabditis elegans


Alignment Length:413 Identity:176/413 - (42%)
Similarity:259/413 - (62%) Gaps:48/413 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYH-KSIKSIEEDIQKAVKQVNELTGIKES 68
            |...:||:......::::|.|.:.:.|:.|.:.:|:.. ||::|:.:.:.:.:||::|       
 Worm    26 LNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSE------- 83

  Fly    69 DTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTD 133
                                          .|.|...::.|:|::..::          |:...:
 Worm    84 ------------------------------EKFIVKATNGPRYVVGCRR----------SINKEE 108

  Fly   134 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198
            :::|.||.:|.....|...||.::||.|..|..||..:::||||||..|||.:||||||.||::|
 Worm   109 LKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINP 173

  Fly   199 EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEM 263
            |.|..:||.||||.||||||||||||.|||||::.|..|::|:.|.:|.||:||.|||:||:|..
 Worm   174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNY 238

  Fly   264 ARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD 328
            ||..:.|::|.||||||||.||.:|...|.|:|||::||:|||||||..|.:||:||||||||||
 Worm   239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLD 303

  Fly   329 PALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAG 393
            |||:||||||||:|.|||::..|..|.|||:..::...:|.|:.:.:|....:.|::|:||||||
 Worm   304 PALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 368

  Fly   394 MFAIRARRKVATEKDFLEAVKKV 416
            ||||||.|:...::||::||:||
 Worm   369 MFAIRAEREFVIDEDFMKAVRKV 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt1NP_477473.1 PRK03992 88..430 CDD:179699 162/329 (49%)
rpt-4NP_001022113.1 PRK03992 21..391 CDD:179699 174/411 (42%)

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