DRSC/TRiP Functional Genomics Resources

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Protein Alignment Coop and jigr1

DIOPT Version :10

Sequence 1:NP_610286.2 Gene:Coop / 35677 FlyBaseID:FBgn0263240 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_651409.1 Gene:jigr1 / 43093 FlyBaseID:FBgn0039350 Length:336 Species:Drosophila melanogaster


Alignment Length:264 Identity:48/264 - (18%)
Similarity:82/264 - (31%) Gaps:113/264 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LIAAVSRRPMLWLRNNANGQKRSDITPVWFEVGQDVNLPADICRIKWGHLRD--NFRKVYIRNNL 105
            ||......|:|:.|:|...:.:..:..:|.::...:...|...|.:...||:  |..|..:.|.|
  Fly    33 LIREYRSHPVLYDRSNKRFKDKLYVAHIWEQIAHKLGYDATSIRERMTTLRNRYNIEKRRVENGL 97

  Fly   106 SNETPSSWRFYNDMRFMEPAVHENIMRQTRSSSKKHPPGHWTENNNVLGPDKYDSMPIVATEPIC 170
            |.:: |.|..:..::|:...:     |..||                                  
  Fly    98 STQS-SQWPLFESLQFLGDHI-----RPRRS---------------------------------- 122

  Fly   171 ELSHSYDSELHQPSFSDISSFFEDRDCQPPENKRFKSEPSQREEDEE----DDDDFDEDAASENL 231
                                              ||: .|.:|||||    ||...|.:....::
  Fly   123 ----------------------------------FKN-MSVKEEDEETYEVDDCRSDSNGHMNSI 152

  Fly   232 EEERGNRADAASSGVFTIEVLDDDDEM---EQAVTKTKA-----NNTSHGGSSLKSEQEAKVFSN 288
            ::|                 |:||.|:   |||:..|..     ||:.....|.:|       :|
  Fly   153 KDE-----------------LEDDSEIFDCEQALPVTTVLGIPLNNSDEANKSQRS-------TN 193

  Fly   289 SQSP 292
            .:.|
  Fly   194 GEMP 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CoopNP_610286.2 MADF 42..124 CDD:214738 19/82 (23%)
BESS 320..353 CDD:460758
jigr1NP_651409.1 MADF 33..118 CDD:214738 19/90 (21%)
Blue background indicates that the domain is not in the aligned region.

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