DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ef and tspan18b

DIOPT Version :10

Sequence 1:NP_523632.2 Gene:Tsp42Ef / 35615 FlyBaseID:FBgn0033127 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001002439.2 Gene:tspan18b / 436712 ZFINID:ZDB-GENE-040718-137 Length:258 Species:Danio rerio


Alignment Length:250 Identity:53/250 - (21%)
Similarity:97/250 - (38%) Gaps:52/250 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSVKLIVYALDVLCTLLALVLISFGIYVAVS-------YNLNEIGQLTAYGYVGLGAAALLVVLW 62
            |.:|.:::..:.|..|....|:..|::|.|.       ...|.:.....|..:.:|....|:...
Zfish    19 SCIKYLMFVFNFLIFLGGSFLLGVGVWVVVDPTGFREIVAANPLLFTGVYIILAMGGMLFLLGFL 83

  Fly    63 GYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLL------ITQEKTVAS--------NLANALEA 113
            |...|.|||.|..:.|.:.:.::.:|:.|...|.      :|:|.....        |..:...:
Zfish    84 GCCGAIRENKCLLLFFFMLILIIFLAELAAAILAFIFREHLTREYFTKELKKHYQGYNNTDVFTS 148

  Fly   114 TWEEELNSPGAMSLYQNWFQCCGRGSPQDY------IVN-ERLPPETC-----------FRNHDK 160
            ||...:|:          |.|||..||:|:      |:| ..:.||.|           |.|.::
Zfish   149 TWNAIMNT----------FDCCGVNSPEDFEESIFRIINPSEMVPEACCRRNNHVGESGFSNREE 203

  Fly   161 SKPENLIH---TGCRVEFENYWQHLTKIFNILALVLIGFELLLSVISCRLCNSIR 212
            ....::::   .||.....:|::....:...||:|::..||...|.:..|...|:
Zfish   204 CLSGSMLYRNNKGCYSAVVDYFEMYIYVAGALAIVVLTIELFAMVFAMCLFRGIQ 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EfNP_523632.2 Tetraspanin 7..209 CDD:459767 51/243 (21%)
tspan18bNP_001002439.2 Tetraspanin 21..255 CDD:459767 51/243 (21%)
uroplakin_I_like_LEL 118..229 CDD:239409 23/120 (19%)

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