DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ef and Rom1

DIOPT Version :10

Sequence 1:NP_523632.2 Gene:Tsp42Ef / 35615 FlyBaseID:FBgn0033127 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_033099.3 Gene:Rom1 / 19881 MGIID:97998 Length:351 Species:Mus musculus


Alignment Length:281 Identity:59/281 - (20%)
Similarity:87/281 - (30%) Gaps:104/281 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IVYALDVLCTLLALVLIS-FGIYVAVSYNLNEIGQL----------TAYGYVGLGAAALLVVLWG 63
            :|..|.:||:...||.:. .|.::|.|.:...:.|.          |..|..|...|:|....: 
Mouse    30 LVGGLTLLCSGHLLVQLGHLGTFLAPSCSFPALPQTALAAGTVALGTGLGGAGASRASLDAAQY- 93

  Fly    64 YLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQEKTVASNLANALEATWEEELNS------- 121
              ..||.         :...|:.:...|...||     |:|..||.||..:..:.|..       
Mouse    94 --PPWRG---------VLTPLLAVGTAAGGGLL-----TLALGLALALPVSLNQGLEEGLEAALA 142

  Fly   122 -------PG------AMSLYQNWFQCCGRG----------------SPQDYIVNERLP------- 150
                   ||      .|...|..:.||||.                .|.|..|.:|:.       
Mouse   143 HYKDTEVPGRCQAKRLMDELQLRYHCCGRHGYKDWFGVQWVSNRYLDPSDQDVVDRIQSNVEGLY 207

  Fly   151 -----PETCFRNH-------------------DKSKPE-NLIHTGCRVEFENYWQHLT-KIFNIL 189
                 |.:|...|                   |..:|. ||...||......:.|.|: .:.:||
Mouse   208 LIDGVPFSCCNPHSPRPCLQSQLSDPYAHPLFDPRQPNLNLWAQGCHEVLLEHLQGLSGTLGSIL 272

  Fly   190 A-------LVLIGFELLLSVI 203
            |       |||:|...|.:.:
Mouse   273 AVTLLLQILVLLGLRYLQTAL 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EfNP_523632.2 Tetraspanin 7..209 CDD:459767 59/281 (21%)
Rom1NP_033099.3 peripherin_like_LEL 128..264 CDD:239415 23/135 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

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