DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and Coro7

DIOPT Version :10

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001178568.1 Gene:Coro7 / 192276 RGDID:621591 Length:922 Species:Rattus norvegicus


Alignment Length:487 Identity:146/487 - (29%)
Similarity:235/487 - (48%) Gaps:59/487 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSKFRHVYGQALKREQCYDNIR---VSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVGR 69
            ||||||..|..|.|:....|::   ::.......|||...:....::.|  ||...||...|.||
  Rat   467 SSKFRHAEGTILHRDSHITNLKGLNLTTPGESDGFCANRLRVAVPLLSS--GGQVAVLELQKPGR 529

  Fly    70 I--AADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQR 132
            :  .|...|..|  ..|:|:.|.|.:.:.:|...||..:::|::|.|||...||.|...|..|..
  Rat   530 LPDTALPTLQNG--AAVMDLVWDPFDPHRLAVAGEDARIRLWRVPPGGLKNVLTTPETVLTGHTE 592

  Fly   133 RVGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKK 197
            ::..:.:||.|.:||.::..|..:.||::..|...:.:..|.|.::|..::.||.:|.|.|||.:
  Rat   593 KIYSLRFHPLAADVLASSSYDLTIRIWDLQAGTEQLRLQGHQDQIFSLAWSPDGKQLATVCKDGR 657

  Fly   198 IRIYDPRTAELE-SEAMCHEGSKATRAIFL-RHGLIFTTGFNRSSERQYSLRAPDALNE-PIVMV 259
            :|:||||::.|. .:....||.:..|.::: ..|.:..:||:..||||..|...|||.| |..::
  Rat   658 VRVYDPRSSPLPLQDGPGPEGGRGARIVWVCNGGCLLVSGFDSRSERQLQLYMADALAEGPSALL 722

  Fly   260 ELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKRGC 324
            .||.:...:.|.||.||.::.|.||||:.:..:||.||.||....|:|.:.:|.:|..|:||..|
  Rat   723 GLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYEVIPEAPFFLECNSFTSPDPHKGFILLPKTEC 787

  Fly   325 DVTTCEVAKFYRMNNNGLCQVISMTVPR-KSDLFQEDLYPDTLAEDA-AITAEEWIDGKDADPIT 387
            |:...|.|:..|:....| :.::..:|| :.:.||:|::|||....| |:.|:.|..|.:..|..
  Rat   788 DIQDVEFARCLRLRQTSL-EPVAFRLPRVRKEFFQDDVFPDTAVTWASALDAKAWFKGANGQPRL 851

  Fly   388 FSLKDRVSIVQGGYVSSSVNKSLPAKKAGNILNKPRGDSASSGATSSSAGGGNFASGNNNEASEG 452
            .||:.     .|....|...:.:||::                 |.||                 
  Rat   852 LSLQP-----PGMTPVSQAPREVPARR-----------------TPSS----------------- 877

  Fly   453 GPPAAVLSEKDLRTIQDEIRKLKAIIVKQENR 484
               |..|.||..:..::|:  |.|::.|..||
  Rat   878 ---AQYLEEKSDQQKKEEL--LNAMVAKLGNR 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 WD40 9..>392 CDD:475233 128/392 (33%)
WD40 repeat 37..78 CDD:293791 13/42 (31%)
WD40 repeat 85..129 CDD:293791 15/43 (35%)
WD40 repeat 134..171 CDD:293791 9/36 (25%)
WD40 repeat 178..213 CDD:293791 14/35 (40%)
WD40 repeat 220..260 CDD:293791 14/41 (34%)
WD40 repeat 267..308 CDD:293791 17/40 (43%)
Coro7NP_001178568.1 WD40 7..426 CDD:475233
WD 1 75..115
WD40 repeat 81..124 CDD:293791
WD 2 124..163
WD40 repeat 129..165 CDD:293791
WD 3 166..205
WD40 repeat 172..208 CDD:293791
WD 4 209..253
WD40 repeat 215..256 CDD:293791
WD40 repeat 264..302 CDD:293791
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 386..462
WD40 468..870 CDD:475233 130/411 (32%)
WD 5 539..579 13/41 (32%)
WD40 repeat 542..588 CDD:293791 15/45 (33%)
WD 6 589..629 10/39 (26%)
WD40 repeat 595..631 CDD:293791 9/35 (26%)
WD 7 632..671 16/38 (42%)
WD40 repeat 637..674 CDD:293791 14/36 (39%)
WD 8 725..765 17/39 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 854..922 18/95 (19%)
Blue background indicates that the domain is not in the aligned region.

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