DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and coro7

DIOPT Version :10

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:XP_002932508.2 Gene:coro7 / 100492934 XenbaseID:XB-GENE-949602 Length:907 Species:Xenopus tropicalis


Alignment Length:489 Identity:163/489 - (33%)
Similarity:251/489 - (51%) Gaps:64/489 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSKFRHVYGQALKREQCYDNIR-VSKSSWDST--FCAVNPKFLAIIVESAGGGAFIVLPHNKVGR 69
            ||:.||..|..|.|:....|:| :|:|:...:  || ||.:..|:.: :|.||...||..::.||
 Frog   453 SSRLRHTQGTVLHRDHHITNLRGISQSTPGESDGFC-VNYQRAAVPL-AAPGGQVAVLEFSQTGR 515

  Fly    70 IAADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRRV 134
            :....|.| .:..||.|:.|.|.|.:.:.:|.||..::|||||..||.:|||||.:.|..|..|:
 Frog   516 LPDTLPTV-QNSVPVTDLTWDPFNPHRLVTGGEDGRIRVWQIPQKGLKKTLTEPHIVLTGHNERI 579

  Fly   135 GLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKKIR 199
            ..|.:||.|.::|.::..|..|.|||:.||:.:..:..|.|.::|..::.||..|.|..||::||
 Frog   580 YTVRFHPCASDILASSSYDFTVRIWNLQTGKDVHVLRGHEDQIFSLAWSPDGKYLATCSKDQRIR 644

  Fly   200 IYDPRTAELE-SEAMCHEGSKATRAIFLRHG-LIFTTGFNRSSERQYSLRAPDALN-EPIVMVEL 261
            ||:||.:.|. .|....|||:..|.:::..| .:..:|||..|:||.||.:|:.|: .|:....|
 Frog   645 IYEPRKSNLPMQEGPGPEGSRGARVVWVCDGKYLLASGFNSRSDRQISLLSPEDLSCGPVSKTNL 709

  Fly   262 DTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKRGCDV 326
            |.|...:.|.||.||:::.|.||||:....|||..|||:....|||.:|:..:|..::.|..|.|
 Frog   710 DVSPSTLIPHYDPDTSLLLLTGKGDTRAFLFEVLAEPPYFLECNTFSSTDSHKGFQVLRKLDCAV 774

  Fly   327 TTCEVAKFYRMNNNGLCQVISMTVPR-KSDLFQEDLYPDT-LAEDAAITAEEWIDGKDADPITFS 389
            ...|:.:..|:.::.| :.:|..||| |.:.||:||:|.: :..:.|::|.:|:||||....|  
 Frog   775 CDAEIVRAVRLGSSSL-EPVSFRVPRVKKEFFQDDLFPPSRITWEPALSAGDWLDGKDLQQRT-- 836

  Fly   390 LKDRVSIVQGGYVS-SSVNKSLPAKKAGNILNKPRGDSASSGATSSSAGGGNFASGNNNEASEGG 453
                :::...|.|. |...|..||:|   ||                                  
 Frog   837 ----INLCPDGMVPVSQAPKEAPARK---IL---------------------------------- 860

  Fly   454 PPAAVLSEKDLRTIQDEIRK---LKAIIVKQENR 484
            |.:..|.||     .||.:|   |.|::.|..||
 Frog   861 PSSVYLQEK-----TDEQKKEELLNAMVAKLGNR 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 WD40 9..>392 CDD:475233 141/390 (36%)
WD40 repeat 37..78 CDD:293791 13/42 (31%)
WD40 repeat 85..129 CDD:293791 20/43 (47%)
WD40 repeat 134..171 CDD:293791 12/36 (33%)
WD40 repeat 178..213 CDD:293791 15/35 (43%)
WD40 repeat 220..260 CDD:293791 13/41 (32%)
WD40 repeat 267..308 CDD:293791 18/40 (45%)
coro7XP_002932508.2 DUF1899 3..61 CDD:462645
WD40 80..419 CDD:475233
WD40 repeat 81..122 CDD:293791
WD40 repeat 127..163 CDD:293791
WD40 repeat 170..206 CDD:293791
WD40 repeat 213..254 CDD:293791
WD40 repeat 261..300 CDD:293791
WD40 454..871 CDD:475233 154/468 (33%)
WD40 repeat 530..574 CDD:293791 20/43 (47%)
WD40 repeat 579..616 CDD:293791 12/36 (33%)
WD40 repeat 623..659 CDD:293791 15/35 (43%)
WD40 repeat 666..710 CDD:293791 13/43 (30%)
WD40 repeat 719..756 CDD:293791 17/36 (47%)
Blue background indicates that the domain is not in the aligned region.

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