DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-286

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001041174.1 Gene:nhr-286 / 4363091 WormBaseID:WBGene00044699 Length:386 Species:Caenorhabditis elegans


Alignment Length:59 Identity:16/59 - (27%)
Similarity:19/59 - (32%) Gaps:19/59 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PSVAPCSSC---QKPVPVQ-------YRVNYVAPVCNTCEEKRCPMGYKWDGCKCVPDC 72
            ||..|.|..   .||.|::       ...|.....|..|         |:...||.|||
 Worm     2 PSGKPSSVFPLHPKPTPLKPSSSTSSSNNNSTNQACAAC---------KYQRRKCAPDC 51

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535
NR_LBD_EcR 420..652 CDD:132736
nhr-286NP_001041174.1 ZnF_C4 8..77 CDD:197701 13/53 (25%)
Hormone_recep 155..349 CDD:459675
Blue background indicates that the domain is not in the aligned region.

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